Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CTZ23_RS01860 Genome accession   NZ_CP024620
Coordinates   381477..382112 (-) Length   211 a.a.
NCBI ID   WP_104988117.1    Uniprot ID   -
Organism   Acinetobacter indicus strain SGAir0564     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 376477..387112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTZ23_RS01825 (CTZ23_01825) mlaE 376752..377531 (+) 780 WP_005180328.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  CTZ23_RS01830 (CTZ23_01830) - 377531..378202 (+) 672 WP_104988115.1 outer membrane lipid asymmetry maintenance protein MlaD -
  CTZ23_RS01835 (CTZ23_01835) - 378221..378853 (+) 633 WP_005180322.1 phospholipid-binding protein MlaC -
  CTZ23_RS01840 (CTZ23_01840) - 378865..379152 (+) 288 WP_045795311.1 STAS domain-containing protein -
  CTZ23_RS01845 (CTZ23_01845) - 379291..380304 (-) 1014 WP_104988116.1 CorA family divalent cation transporter -
  CTZ23_RS01850 (CTZ23_01850) - 380457..381050 (+) 594 WP_005180318.1 TIGR00730 family Rossman fold protein -
  CTZ23_RS01855 (CTZ23_01855) - 381053..381454 (+) 402 WP_045795312.1 NUDIX hydrolase -
  CTZ23_RS01860 (CTZ23_01860) comF 381477..382112 (-) 636 WP_104988117.1 ComF family protein Machinery gene
  CTZ23_RS01865 (CTZ23_01865) recG 382099..384144 (-) 2046 WP_104988118.1 ATP-dependent DNA helicase RecG -
  CTZ23_RS01870 (CTZ23_01870) - 384178..384993 (+) 816 WP_104988119.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24256.32 Da        Isoelectric Point: 9.2589

>NTDB_id=254425 CTZ23_RS01860 WP_104988117.1 381477..382112(-) (comF) [Acinetobacter indicus strain SGAir0564]
MPMFKLLAHSRTLLQKLLPCQLCGSAAQQQYRVCADCLKQLPWLKANVCRQETEIQVACHYRYPVDRIIQQFKYEQQLHY
QSLLAGSLCELAYPRVQAIVPMPVAAERLAERGYHHTLLLAQVLARHLQLPIWQPVVRRHQHSQKGLSRLERLENLDQQF
QLRPDAGRPYRRVLIVDDVVTTGSSIRALKQQLEQLGCHKVYAVCIASADG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=254425 CTZ23_RS01860 WP_104988117.1 381477..382112(-) (comF) [Acinetobacter indicus strain SGAir0564]
ATGCCTATGTTTAAGCTGCTGGCGCATAGCCGTACGCTATTACAAAAATTACTGCCCTGCCAGCTCTGTGGCAGTGCGGC
CCAGCAGCAGTACCGGGTTTGTGCAGACTGTTTGAAACAACTGCCATGGTTAAAAGCAAACGTCTGCCGGCAGGAAACCG
AGATTCAGGTGGCCTGTCATTATCGTTATCCAGTCGACCGGATAATTCAGCAATTCAAATATGAGCAGCAACTGCATTAT
CAGTCTTTACTCGCGGGCAGCCTGTGTGAATTGGCCTATCCACGGGTACAGGCCATTGTGCCGATGCCAGTGGCAGCCGA
GCGACTGGCGGAACGCGGTTATCATCATACCCTGCTGCTGGCTCAGGTGCTGGCACGTCATTTACAGCTACCAATCTGGC
AACCGGTTGTACGGCGCCATCAACACAGTCAAAAAGGCTTAAGCCGGCTGGAACGACTGGAAAATCTGGACCAGCAATTC
CAGCTGCGACCCGATGCCGGCCGGCCTTATCGCCGGGTATTAATTGTTGATGATGTGGTCACCACCGGCAGCTCAATTCG
TGCACTGAAACAGCAGCTGGAGCAACTTGGCTGTCACAAGGTCTATGCGGTGTGTATTGCCAGTGCCGATGGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

55.981

99.052

0.555
  comF Acinetobacter baumannii strain A118

55.981

99.052

0.555

Multiple sequence alignment