Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   DKY66_RS05325 Genome accession   NZ_CP029561
Coordinates   985123..986193 (-) Length   356 a.a.
NCBI ID   WP_000817931.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 32790-3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 980123..991193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKY66_RS05305 (DKY66_05295) - 980658..981410 (+) 753 WP_000923535.1 ABC transporter ATP-binding protein -
  DKY66_RS05310 (DKY66_05300) - 981412..983367 (+) 1956 WP_000499553.1 FtsX-like permease family protein -
  DKY66_RS05315 (DKY66_05305) braR 983477..984145 (+) 669 WP_000076874.1 response regulator transcription factor Regulator
  DKY66_RS05320 (DKY66_05310) - 984142..985080 (+) 939 WP_000620981.1 HAMP domain-containing sensor histidine kinase -
  DKY66_RS05325 (DKY66_05315) xerS 985123..986193 (-) 1071 WP_000817931.1 tyrosine recombinase XerS Machinery gene
  DKY66_RS05330 (DKY66_05320) - 986578..988173 (+) 1596 WP_000093958.1 peptide ABC transporter substrate-binding protein -
  DKY66_RS05335 (DKY66_05325) - 988206..988979 (-) 774 WP_000622399.1 DUF3307 domain-containing protein -
  DKY66_RS05340 (DKY66_05330) - 988969..989655 (-) 687 WP_000280311.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41377.55 Da        Isoelectric Point: 9.3616

>NTDB_id=254304 DKY66_RS05325 WP_000817931.1 985123..986193(-) (xerS) [Streptococcus agalactiae strain 32790-3A]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDSSSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=254304 DKY66_RS05325 WP_000817931.1 985123..986193(-) (xerS) [Streptococcus agalactiae strain 32790-3A]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACACTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCTCTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATTCTTCAAGTGTAGAGAAAATGGTTGCTA
AGTATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAACTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(184-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834