Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SAOUHSC_00349 Genome accession   NC_007795
Coordinates   360947..361450 (+) Length   167 a.a.
NCBI ID   YP_498938.1    Uniprot ID   Q2G112
Organism   Staphylococcus aureus subsp. aureus NCTC 8325     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 355947..366450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOUHSC_00342 - 356884..357729 (+) 846 YP_498932.1 ParB family chromosome partioning protein -
  SAOUHSC_00344 - 357886..358767 (+) 882 YP_498933.1 hypothetical protein -
  SAOUHSC_00345 - 358797..359000 (+) 204 YP_498934.1 hypothetical protein -
  SAOUHSC_00346 - 359012..360109 (+) 1098 YP_498935.1 GTP-dependent nucleic acid-binding protein EngD -
  SAOUHSC_00347 - 360195..360386 (-) 192 YP_498936.1 hypothetical protein -
  SAOUHSC_00348 rpsF 360630..360926 (+) 297 YP_498937.1 30S ribosomal protein S6 -
  SAOUHSC_00349 ssbA 360947..361450 (+) 504 YP_498938.1 bacteriophage L54a single-stranded DNA binding protein Machinery gene
  SAOUHSC_00350 rpsR 361502..361744 (+) 243 YP_498939.1 30S ribosomal protein S18 -
  SAOUHSC_00351 - 362010..362948 (-) 939 YP_498940.1 hypothetical protein -
  SAOUHSC_00352 - 362987..363298 (-) 312 YP_498941.1 integrase-like protein -
  SAOUHSC_00353 - 363376..363534 (-) 159 YP_498942.1 hypothetical protein -
  SAOUHSC_00354 - 363894..364505 (+) 612 YP_498943.1 hypothetical protein -
  SAOUHSC_00355 - 364874..365242 (+) 369 YP_498944.1 hypothetical protein -
  SAOUHSC_00356 - 365423..365995 (+) 573 YP_498945.1 hypothetical protein -
  SAOUHSC_00357 - 366133..366396 (-) 264 YP_498946.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=25426 SAOUHSC_00349 YP_498938.1 360947..361450(+) (ssbA) [Staphylococcus aureus subsp. aureus NCTC 8325]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=25426 SAOUHSC_00349 YP_498938.1 360947..361450(+) (ssbA) [Staphylococcus aureus subsp. aureus NCTC 8325]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2G112

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment