Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SAOUHSC_00445 Genome accession   NC_007795
Coordinates   447371..447967 (+) Length   198 a.a.
NCBI ID   YP_499027.1    Uniprot ID   Q2G0T3
Organism   Staphylococcus aureus subsp. aureus NCTC 8325     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 442371..452967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOUHSC_00439 - 443300..444028 (+) 729 YP_499022.1 hypothetical protein -
  SAOUHSC_00440 - 444428..444529 (+) 102 YP_499023.1 hypothetical protein -
  SAOUHSC_00441 - 444667..445191 (+) 525 YP_499024.1 hypothetical protein -
  SAOUHSC_00442 - 445284..446957 (+) 1674 YP_499025.1 DNA polymerase III subunits gamma and tau -
  SAOUHSC_00444 - 447047..447364 (+) 318 YP_499026.1 hypothetical protein -
  SAOUHSC_00445 recR 447371..447967 (+) 597 YP_499027.1 recombination protein RecR Machinery gene
  SAOUHSC_00446 - 448172..448270 (+) 99 YP_499028.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=25426 SAOUHSC_00445 YP_499027.1 447371..447967(+) (recR) [Staphylococcus aureus subsp. aureus NCTC 8325]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=25426 SAOUHSC_00445 YP_499027.1 447371..447967(+) (recR) [Staphylococcus aureus subsp. aureus NCTC 8325]
ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2G0T3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment