Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SARO_RS14445 Genome accession   NC_007794
Coordinates   3074150..3074701 (-) Length   183 a.a.
NCBI ID   WP_011446488.1    Uniprot ID   Q2G4D9
Organism   Novosphingobium aromaticivorans DSM 12444     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3069150..3079701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SARO_RS14430 (Saro_2845) - 3069304..3070422 (-) 1119 WP_011446485.1 ABC transporter permease -
  SARO_RS14435 (Saro_2846) - 3070572..3073286 (+) 2715 WP_011446486.1 valine--tRNA ligase -
  SARO_RS14440 (Saro_2847) - 3073305..3074048 (+) 744 WP_011446487.1 7-carboxy-7-deazaguanine synthase QueE -
  SARO_RS14445 (Saro_2848) ssb 3074150..3074701 (-) 552 WP_011446488.1 single-stranded DNA-binding protein Machinery gene
  SARO_RS14450 (Saro_2849) - 3074799..3076655 (-) 1857 WP_011446489.1 ferrous iron transporter B -
  SARO_RS14455 (Saro_2850) - 3076652..3076909 (-) 258 WP_011446490.1 FeoA family protein -
  SARO_RS14460 (Saro_2851) - 3076998..3077651 (-) 654 WP_011446491.1 COQ9 family protein -
  SARO_RS14465 (Saro_2852) - 3077665..3078282 (-) 618 WP_011446492.1 ankyrin repeat domain-containing protein -
  SARO_RS14470 (Saro_2853) - 3078375..3078989 (+) 615 WP_011446493.1 SCO family protein -
  SARO_RS14475 (Saro_2854) - 3078997..3079470 (+) 474 WP_011446494.1 YcgN family cysteine cluster protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18317.86 Da        Isoelectric Point: 5.9290

>NTDB_id=25421 SARO_RS14445 WP_011446488.1 3074150..3074701(-) (ssb) [Novosphingobium aromaticivorans DSM 12444]
MAGSVNKVILVGNLGADPEIKSFQNGGRIANLRIATSESWKDRATGEKKERTEWHSVVINSDGLVGVVERFLRKGSKVYI
EGQLRTRKWQDQSGNDRYTTEISVGGMGGVLTMLDGSGGAGGGSGGGGRSSGGGWNEGGSSGGGGFGGGSRGGSSGGGSG
GGWNQGGGSGGGFGDDLDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=25421 SARO_RS14445 WP_011446488.1 3074150..3074701(-) (ssb) [Novosphingobium aromaticivorans DSM 12444]
ATGGCAGGCAGCGTCAACAAGGTTATCCTCGTCGGCAATCTCGGGGCCGACCCGGAAATCAAGAGCTTCCAGAACGGGGG
CCGCATCGCCAATCTGCGCATCGCGACCTCGGAAAGCTGGAAGGACCGCGCCACCGGCGAAAAGAAGGAGCGCACCGAGT
GGCACTCCGTCGTGATCAACTCCGACGGTCTGGTCGGCGTGGTCGAACGCTTCCTGCGCAAGGGCTCGAAGGTCTACATC
GAAGGTCAGCTTCGCACCCGCAAGTGGCAGGACCAGTCCGGCAATGACCGCTACACCACCGAAATCTCGGTTGGCGGCAT
GGGTGGCGTGCTGACCATGCTCGATGGTTCGGGCGGCGCTGGCGGCGGTAGCGGTGGTGGTGGCCGCTCGTCGGGCGGTG
GCTGGAACGAAGGCGGTTCCTCGGGCGGTGGCGGCTTCGGCGGCGGTTCGCGCGGCGGCTCGTCCGGCGGTGGTTCGGGT
GGCGGCTGGAACCAGGGCGGCGGCAGCGGCGGCGGCTTCGGCGACGACCTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2G4D9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.842

100

0.486
  ssb Vibrio cholerae strain A1552

46.927

97.814

0.459

Multiple sequence alignment