Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DLJ52_RS10355 Genome accession   NZ_CP029559
Coordinates   2129909..2131003 (+) Length   364 a.a.
NCBI ID   WP_019795301.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2124909..2136003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ52_RS10330 (DLJ52_10330) pgsA 2125431..2125973 (-) 543 WP_019770420.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DLJ52_RS10335 (DLJ52_10335) - 2125985..2126842 (-) 858 WP_019786731.1 helix-turn-helix domain-containing protein -
  DLJ52_RS10340 (DLJ52_10340) - 2126903..2128171 (-) 1269 WP_109982800.1 pitrilysin family protein -
  DLJ52_RS10345 (DLJ52_10345) - 2128173..2129420 (-) 1248 WP_019789261.1 pitrilysin family protein -
  DLJ52_RS10350 (DLJ52_10350) - 2129500..2129907 (+) 408 WP_002961272.1 RNA-binding S4 domain-containing protein -
  DLJ52_RS10355 (DLJ52_10355) recF 2129909..2131003 (+) 1095 WP_019795301.1 DNA replication/repair protein RecF Machinery gene
  DLJ52_RS10360 (DLJ52_10360) guaB 2131242..2132723 (-) 1482 WP_109982801.1 IMP dehydrogenase -
  DLJ52_RS10365 (DLJ52_10365) - 2132928..2134322 (+) 1395 WP_109982810.1 ISNCY family transposase -
  DLJ52_RS10370 (DLJ52_10370) trpS 2134489..2135514 (-) 1026 WP_109982802.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41470.29 Da        Isoelectric Point: 7.0422

>NTDB_id=254149 DLJ52_RS10355 WP_019795301.1 2129909..2131003(+) (recF) [Streptococcus sobrinus strain NIDR 6715-15]
MWLESISLKNFRNYTEMTADFSSGLNVFLGQNAQGKTNFLEAIYFLALTRSHRTRSDKELINFKAKDLSVSGLLRRRGGK
LPLEIDLSDKGRTTKLNYLKQIKLSDYVGNMTVVLFAPEDLQLVKGAPSLRRKFLDIDLGQIKPVYLADLSNYNHVLKQR
NAYLKAAETIDKDYLAVIDEQLADFGSRVMEHRYQFVQDLTVEADKHHHIISNQLEHLKISYQSSVKFQEPAEIKQNFLD
QLAKSFSRDSFKKNTGVGPHRDDLTFFINDMDASFGSQGQQRSLILSLKLAEIELIKAITGDSPILLLDDVMSELDNHRQ
LRLLDGIKENVQTFITTTSLDHLQGLPDNLKIFTVDQGTIKTNE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=254149 DLJ52_RS10355 WP_019795301.1 2129909..2131003(+) (recF) [Streptococcus sobrinus strain NIDR 6715-15]
ATGTGGTTAGAATCTATTTCCCTCAAAAATTTCCGTAATTATACTGAGATGACTGCTGATTTTTCTAGCGGTCTCAATGT
TTTCCTCGGCCAAAACGCTCAGGGTAAGACCAATTTTCTCGAAGCCATTTATTTTCTAGCCCTAACTCGTAGTCACAGAA
CCCGCTCAGATAAGGAGCTAATCAATTTTAAGGCCAAGGACCTGTCTGTCTCTGGTCTTTTACGAAGAAGGGGAGGCAAG
CTTCCTCTAGAAATTGACCTATCTGATAAGGGTCGAACAACCAAGCTTAACTACCTCAAACAAATCAAATTATCCGACTA
TGTTGGCAATATGACTGTGGTTCTCTTTGCCCCTGAAGATTTACAGTTGGTAAAGGGAGCCCCCAGTCTCAGGCGGAAAT
TTTTAGACATTGATTTGGGTCAAATCAAGCCCGTCTACCTGGCCGACCTCTCCAATTATAATCATGTTTTAAAACAAAGA
AATGCCTACCTCAAGGCAGCAGAGACCATTGATAAGGATTATTTGGCAGTCATTGATGAACAACTAGCTGATTTTGGCAG
TCGGGTCATGGAGCATCGTTATCAATTTGTCCAAGACTTGACAGTGGAAGCTGATAAGCACCACCATATCATCTCCAACC
AGCTGGAGCATCTAAAAATTTCCTATCAGTCATCGGTTAAATTTCAAGAACCAGCCGAGATTAAGCAAAATTTCCTAGAC
CAATTGGCCAAATCCTTTAGCCGAGATAGCTTCAAAAAGAATACCGGTGTCGGACCGCACCGCGACGATCTGACCTTTTT
TATCAACGATATGGACGCTTCCTTTGGTAGCCAAGGTCAACAACGCAGCTTAATTTTATCTCTAAAACTGGCAGAAATTG
AGCTGATTAAAGCCATAACCGGAGATAGTCCAATTCTTTTATTGGATGATGTTATGAGTGAGCTTGACAACCACCGTCAA
CTTCGTTTATTGGATGGTATCAAGGAAAACGTGCAAACCTTTATTACCACAACTAGTTTGGACCACTTACAAGGTTTACC
AGATAACTTAAAAATCTTTACAGTTGATCAGGGTACTATAAAAACCAACGAGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.289

99.725

0.651
  recF Bacillus subtilis subsp. subtilis str. 168

43.966

95.604

0.42