Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AUF16_RS13230 Genome accession   NZ_CP024590
Coordinates   2669424..2671208 (+) Length   594 a.a.
NCBI ID   WP_082158522.1    Uniprot ID   -
Organism   Enterococcus avium strain FDAARGOS_184     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2664424..2676208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUF16_RS13205 (AUF16_13225) - 2664748..2665185 (+) 438 WP_016181742.1 MarR family winged helix-turn-helix transcriptional regulator -
  AUF16_RS13210 (AUF16_13230) - 2665186..2666565 (+) 1380 WP_049221325.1 MATE family efflux transporter -
  AUF16_RS13215 (AUF16_13235) - 2666699..2667040 (+) 342 WP_148712613.1 hypothetical protein -
  AUF16_RS13220 (AUF16_13240) - 2667100..2667534 (+) 435 WP_048719420.1 MarR family winged helix-turn-helix transcriptional regulator -
  AUF16_RS13225 (AUF16_13245) rcrP 2667665..2669431 (+) 1767 WP_049221319.1 ABC transporter ATP-binding protein Regulator
  AUF16_RS13230 (AUF16_13250) rcrQ 2669424..2671208 (+) 1785 WP_082158522.1 ABC transporter ATP-binding protein Regulator
  AUF16_RS13235 (AUF16_13255) - 2671543..2673066 (+) 1524 WP_049221317.1 zinc ABC transporter substrate-binding protein AdcA -
  AUF16_RS13240 (AUF16_13260) - 2673082..2673198 (+) 117 WP_102866097.1 putative metal homeostasis protein -
  AUF16_RS13245 (AUF16_13265) - 2673446..2675194 (+) 1749 WP_049221315.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 65994.93 Da        Isoelectric Point: 5.9884

>NTDB_id=254106 AUF16_RS13230 WP_082158522.1 2669424..2671208(+) (rcrQ) [Enterococcus avium strain FDAARGOS_184]
MDNTLENAHTPVKEHPLRDNVFKALNQYKWPLLVAIVFATIGSITQIVGPNRLSEITDLITQGLSGSINLTRISQLGLGL
VILYGIGSILSYFQGFIVATVTQRFSKQMRRQISEKINAVLLNYFDSHSQGDTLSRVTNDLDTVSQSLNQSLSTLFPSIT
LFIGCLVMMFRTNLLLTITSVVAVLLGFVLMAVIMAKSQVHFNQQQQKLAKINGFAEEAYSGQQVISAYSAKKDMKDEFK
EMNQDFYGSVWKAQFLSGIMQPLMGFIGNFGYVAVCVVGAVLALRGDITLGVIVAFTVYIRLFSQPLSQLAQAFSSLQSA
GAAMNRVFEFLAEEELADESKKGTHIRSAEGNVRFENVSFGYDKDQTIIHNFSVDAKAGQKIAIVGPTGAGKTTIVNLLM
RFYETNRGVIKIDGVSTKDMTREEVHDQFCMVLQDTWMFEGTIKENLIYNQQHVADDTVIDACKAVGIDHFIRTLPKGYD
TYLDDSVSLSVGQKQLMTIARAIIKDAPMLILDEATSSVDTRTEELIQAAMDKLMSNRTSFVIAHRLSTIRNADLILVMK
EGNIIEQGNHEELMAQKGFYADLYNSQFEKEQLA

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=254106 AUF16_RS13230 WP_082158522.1 2669424..2671208(+) (rcrQ) [Enterococcus avium strain FDAARGOS_184]
ATGGATAATACTTTAGAAAATGCTCACACACCGGTAAAGGAACATCCATTGAGAGACAATGTTTTTAAAGCTCTGAACCA
ATATAAATGGCCGCTGCTCGTGGCGATCGTATTTGCGACAATTGGCAGTATCACTCAAATCGTTGGACCGAATCGATTAA
GTGAAATCACTGATTTGATTACTCAAGGCTTAAGTGGTTCAATCAATCTCACGCGAATCAGTCAGCTTGGTCTAGGATTG
GTCATTTTATATGGAATAGGGTCAATTCTTTCCTACTTTCAAGGATTCATTGTAGCGACTGTCACGCAACGTTTTTCTAA
ACAAATGCGACGTCAGATATCTGAAAAAATCAATGCAGTTCTATTGAACTATTTTGACTCCCATAGTCAAGGCGATACCT
TGAGTCGGGTAACGAATGACTTGGATACAGTTAGTCAGTCGTTAAATCAAAGCTTAAGTACATTGTTTCCATCGATCACC
TTGTTTATCGGTTGTTTAGTGATGATGTTTCGGACAAATTTGTTGTTAACGATTACTTCAGTGGTTGCTGTACTATTGGG
ATTTGTGTTGATGGCGGTTATTATGGCTAAATCGCAAGTCCACTTTAATCAGCAACAGCAAAAATTGGCTAAAATCAATG
GTTTTGCTGAAGAAGCTTATTCAGGCCAGCAGGTGATTAGTGCCTATAGTGCAAAAAAAGACATGAAAGATGAATTTAAA
GAAATGAATCAAGATTTCTACGGTAGTGTGTGGAAGGCACAGTTTCTTTCAGGAATCATGCAGCCACTAATGGGATTTAT
CGGAAATTTCGGCTATGTAGCGGTCTGTGTTGTGGGTGCTGTATTAGCGTTGAGAGGGGATATCACATTAGGAGTCATCG
TGGCCTTTACGGTTTATATTCGTTTATTTTCACAACCTTTGTCTCAGTTAGCTCAGGCTTTTTCAAGTCTACAGTCAGCA
GGGGCGGCCATGAACCGAGTATTTGAATTTCTTGCTGAAGAAGAATTAGCTGATGAGTCAAAAAAAGGGACGCATATACG
TAGTGCAGAAGGGAATGTTCGTTTTGAAAATGTCAGCTTTGGTTATGACAAAGATCAGACAATCATTCATAATTTTAGTG
TAGATGCCAAAGCAGGACAGAAAATCGCCATCGTTGGACCGACCGGTGCTGGGAAGACAACAATCGTTAATCTGCTGATG
CGATTTTACGAGACAAATCGCGGAGTAATCAAGATCGATGGGGTCTCTACGAAAGACATGACTAGAGAAGAAGTGCATGA
TCAATTTTGTATGGTACTGCAAGATACATGGATGTTTGAAGGAACGATCAAAGAAAATTTGATTTATAATCAACAGCATG
TTGCTGATGACACAGTTATTGATGCCTGTAAAGCAGTCGGGATCGATCATTTTATTCGAACACTTCCAAAAGGCTATGAT
ACGTATTTGGATGATAGTGTTAGTTTGTCGGTAGGACAAAAACAATTAATGACGATTGCTCGTGCTATCATTAAGGATGC
TCCAATGTTGATTTTGGATGAAGCCACTAGCTCTGTTGATACGCGAACAGAAGAATTAATTCAAGCCGCAATGGACAAAT
TGATGAGTAATCGGACTTCCTTTGTGATTGCCCATCGCTTATCAACGATCCGCAATGCGGATCTGATTCTGGTAATGAAA
GAAGGAAATATCATTGAACAAGGAAATCACGAAGAACTGATGGCGCAAAAAGGTTTTTATGCCGATTTGTATAATAGTCA
GTTTGAAAAAGAGCAACTAGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-517)

ABC transporter transmembrane region (ABC_membrane)

(32-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

62.349

97.475

0.608

Multiple sequence alignment