Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AUF16_RS13225 Genome accession   NZ_CP024590
Coordinates   2667665..2669431 (+) Length   588 a.a.
NCBI ID   WP_049221319.1    Uniprot ID   -
Organism   Enterococcus avium strain FDAARGOS_184     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2662665..2674431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUF16_RS13200 (AUF16_13220) - 2662846..2664123 (+) 1278 WP_048720318.1 OFA family MFS transporter -
  AUF16_RS13205 (AUF16_13225) - 2664748..2665185 (+) 438 WP_016181742.1 MarR family winged helix-turn-helix transcriptional regulator -
  AUF16_RS13210 (AUF16_13230) - 2665186..2666565 (+) 1380 WP_049221325.1 MATE family efflux transporter -
  AUF16_RS13215 (AUF16_13235) - 2666699..2667040 (+) 342 WP_148712613.1 hypothetical protein -
  AUF16_RS13220 (AUF16_13240) - 2667100..2667534 (+) 435 WP_048719420.1 MarR family winged helix-turn-helix transcriptional regulator -
  AUF16_RS13225 (AUF16_13245) rcrP 2667665..2669431 (+) 1767 WP_049221319.1 ABC transporter ATP-binding protein Regulator
  AUF16_RS13230 (AUF16_13250) rcrQ 2669424..2671208 (+) 1785 WP_082158522.1 ABC transporter ATP-binding protein Regulator
  AUF16_RS13235 (AUF16_13255) - 2671543..2673066 (+) 1524 WP_049221317.1 zinc ABC transporter substrate-binding protein AdcA -
  AUF16_RS13240 (AUF16_13260) - 2673082..2673198 (+) 117 WP_102866097.1 putative metal homeostasis protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65559.83 Da        Isoelectric Point: 5.7387

>NTDB_id=254105 AUF16_RS13225 WP_049221319.1 2667665..2669431(+) (rcrP) [Enterococcus avium strain FDAARGOS_184]
MIQLIKRTNKKERLLVVSSVLFIIGQVWMDLKVPDYMSQITTLLQTPNTAISEILKPGGWMVLLSLMSFVFSSIVGLFVA
KIAASLTCRVRQDMFGKVMDYSTHEIQQFSIPSLTTRTTNDLTQIQQLVAMGLQLLIKGPITAVWAILKIAGKNWQWTTT
TGVAVLILLIMLFVILSLVQPRFRKVQQLTDKVNSITRENLTGLRVVRAYNAEGYQEEKFEEANQELTSTNLFAGRVMAL
MSPGMSLISSGLTLAVYWIGAYMIQQATGMAKLTLFSDMIVFSSYAMQVVMSFVLMSMIFMILPRATISAKRINEVLDKE
SSVEFPNEGEKKQPDIKGTVEFDHVTFRYPDASEPVVHDINFKAEQGDTVAFIGSTGSGKSTILNLIPRFYETSEGRISI
DGQPINTYSHVNLNDIVGYIPQKPVLFSGTIQSNLDFGISSNAPLDEEKMEEALSIAQASDFVNEKEDKLNSHVAQNGSN
FSGGQKQRLAIARVIARKPEILLFDDSFSALDYKTDKKLREVLKEKLADTTKLIVAQRISTIMDADQIIVLDEGHIFGQG
THEELLESNAVYQEIAYSQLSKEELAHG

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=254105 AUF16_RS13225 WP_049221319.1 2667665..2669431(+) (rcrP) [Enterococcus avium strain FDAARGOS_184]
ATGATACAACTAATAAAAAGAACAAATAAGAAAGAACGACTGCTGGTAGTGTCGAGTGTCCTATTTATCATCGGACAAGT
CTGGATGGATTTAAAGGTACCAGATTATATGTCGCAAATTACGACGCTGCTTCAAACTCCGAATACCGCTATCAGTGAAA
TCTTAAAACCTGGTGGCTGGATGGTCTTATTATCTTTAATGAGCTTTGTTTTTTCATCCATCGTGGGCTTGTTCGTTGCC
AAAATTGCGGCGAGTTTAACTTGCCGGGTACGCCAAGACATGTTTGGCAAGGTGATGGATTATTCTACACATGAAATTCA
GCAATTTTCGATCCCTAGCTTGACCACACGGACGACGAATGATTTAACGCAAATTCAACAACTAGTGGCGATGGGATTGC
AATTGCTGATCAAAGGACCGATCACAGCAGTTTGGGCGATTTTGAAAATCGCTGGCAAGAACTGGCAGTGGACGACAACT
ACCGGCGTAGCCGTTCTGATCTTATTAATCATGTTGTTCGTCATCCTATCACTTGTGCAACCAAGATTCCGAAAAGTTCA
GCAATTGACAGATAAGGTAAATAGTATCACACGAGAAAATTTAACCGGACTACGAGTGGTACGTGCGTACAATGCTGAAG
GTTATCAGGAAGAAAAATTTGAAGAGGCAAATCAAGAGCTAACTTCGACGAATTTGTTTGCTGGCCGAGTGATGGCTTTG
ATGAGCCCTGGTATGAGCTTGATATCTAGTGGTTTAACACTAGCAGTTTATTGGATCGGCGCGTATATGATTCAGCAAGC
AACGGGGATGGCGAAGCTGACCTTGTTCAGTGATATGATCGTGTTTTCTTCCTATGCGATGCAGGTGGTCATGAGTTTTG
TTTTGATGTCGATGATCTTCATGATTTTGCCACGGGCAACGATTTCGGCCAAACGGATCAATGAGGTTTTAGATAAGGAA
TCCTCTGTTGAATTTCCGAATGAGGGAGAGAAAAAGCAGCCAGATATTAAAGGGACTGTTGAGTTTGATCACGTGACCTT
CCGTTATCCAGATGCTTCTGAGCCAGTCGTTCATGACATCAATTTTAAAGCAGAACAAGGAGACACAGTGGCCTTCATCG
GTTCAACCGGGAGTGGGAAAAGTACGATCTTGAATTTGATTCCGCGTTTTTATGAAACCAGTGAAGGCAGGATCTCAATT
GACGGGCAACCGATCAATACTTATAGCCATGTGAATTTGAATGATATTGTCGGATATATTCCACAAAAACCTGTTCTATT
TAGTGGGACGATCCAATCGAACCTAGACTTTGGAATCAGCAGCAACGCTCCGTTAGATGAGGAAAAGATGGAAGAAGCCT
TGTCAATCGCACAAGCTAGTGATTTTGTGAATGAAAAGGAAGACAAACTGAATAGTCACGTTGCGCAAAATGGTAGTAAT
TTTTCAGGAGGTCAAAAGCAGCGTCTGGCAATTGCGCGAGTGATAGCCCGTAAACCTGAAATCTTACTATTTGATGATTC
TTTCTCGGCACTGGATTATAAGACGGATAAAAAATTACGAGAAGTTTTAAAAGAAAAATTGGCAGATACCACTAAATTAA
TTGTGGCGCAACGTATCAGTACCATCATGGATGCCGACCAAATCATCGTTTTAGATGAAGGACATATCTTTGGGCAGGGA
ACCCATGAAGAATTACTGGAATCAAATGCAGTCTATCAAGAGATTGCGTATTCTCAGCTGTCGAAGGAGGAATTAGCACA
TGGATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(358-507)

ABC transporter transmembrane region (ABC_membrane)

(19-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

59.333

100

0.605

Multiple sequence alignment