Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DLJ52_RS03325 Genome accession   NZ_CP029559
Coordinates   650934..651530 (+) Length   198 a.a.
NCBI ID   WP_019768789.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 645934..656530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ52_RS03310 (DLJ52_03310) - 646184..646876 (+) 693 WP_002960468.1 phosphoglycerate mutase -
  DLJ52_RS03315 (DLJ52_03315) - 647524..648543 (+) 1020 WP_109990559.1 IS30 family transposase -
  DLJ52_RS03320 (DLJ52_03320) pbp2b 648696..650861 (+) 2166 WP_109982497.1 penicillin-binding protein PBP2B -
  DLJ52_RS03325 (DLJ52_03325) recR 650934..651530 (+) 597 WP_019768789.1 recombination mediator RecR Machinery gene
  DLJ52_RS03330 (DLJ52_03330) - 651572..652132 (-) 561 WP_019777223.1 NAD(P)H-dependent oxidoreductase -
  DLJ52_RS03335 (DLJ52_03335) - 652129..652725 (-) 597 WP_019768787.1 TetR/AcrR family transcriptional regulator -
  DLJ52_RS03340 (DLJ52_03340) - 652902..653375 (+) 474 WP_109982498.1 MarR family transcriptional regulator -
  DLJ52_RS03345 (DLJ52_03345) - 653372..654610 (+) 1239 WP_109982499.1 acyl-CoA thioester hydrolase/BAAT C-terminal domain-containing protein -
  DLJ52_RS03350 (DLJ52_03350) - 654691..656085 (-) 1395 WP_109982810.1 ISNCY family transposase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21656.79 Da        Isoelectric Point: 4.5286

>NTDB_id=254087 DLJ52_RS03325 WP_019768789.1 650934..651530(+) (recR) [Streptococcus sobrinus strain NIDR 6715-15]
MLYPTPIAKLIDSFSKLPGIGTKTATRLAFYTIGMSDEDVNDFAKNLLAAKRELTYCSVCGNLTDEDPCAICTDETRDKS
VLLVVEESKDVTAMEKIQEYHGLYHVLHGLISPMNGVGPDDINLKSLINRLMDSEINEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=254087 DLJ52_RS03325 WP_019768789.1 650934..651530(+) (recR) [Streptococcus sobrinus strain NIDR 6715-15]
GTGCTTTATCCAACCCCTATTGCAAAATTGATAGATAGTTTTTCTAAACTGCCTGGAATCGGGACCAAGACGGCGACTCG
GCTGGCCTTCTATACCATCGGTATGTCTGATGAAGATGTCAATGACTTTGCCAAAAATCTCTTGGCTGCTAAGCGAGAGC
TGACCTATTGCTCGGTCTGTGGTAATTTAACCGACGAAGACCCATGTGCCATCTGTACCGATGAAACCAGGGATAAATCT
GTTCTCTTAGTTGTTGAGGAGAGCAAGGACGTGACAGCCATGGAGAAAATTCAGGAGTATCACGGTCTCTACCATGTCCT
CCACGGTCTTATTTCGCCTATGAATGGGGTGGGACCTGACGATATTAACCTCAAGTCTCTTATCAATCGGCTTATGGATA
GCGAAATTAACGAGGTCATCGTGGCAACCAATGCTACGGCAGACGGGGAAGCAACCTCCATGTATATCTCTCGAGTCCTC
AAACCCGCTGGTATCAAGGTGACCCGCTTAGCGCGTGGTCTGGCTGTCGGCAGCGATATCGAATATGCTGACGAAGTCAC
CCTGCTTCGAGCTATCGAAAATCGGACAGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

85.354

100

0.854
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48