Detailed information
Bioinformatically predicted
Overview
| Name | comGH | Type | Machinery gene |
| Locus tag | DLJ52_RS00940 | Genome accession | NZ_CP029559 |
| Coordinates | 157410..158363 (+) | Length | 317 a.a. |
| NCBI ID | WP_109990554.1 | Uniprot ID | - |
| Organism | Streptococcus sobrinus strain NIDR 6715-15 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 152410..163363
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLJ52_RS00890 (DLJ52_00890) | comGA/cglA | 152831..153778 (+) | 948 | WP_019777327.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DLJ52_RS00895 (DLJ52_00895) | comGB | 153702..154745 (+) | 1044 | WP_002959504.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DLJ52_RS00900 (DLJ52_00900) | comGC | 154742..155068 (+) | 327 | WP_019770073.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DLJ52_RS00905 (DLJ52_00905) | comGD | 155022..155456 (+) | 435 | WP_254051091.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DLJ52_RS00910 (DLJ52_00910) | comGE | 155428..155721 (+) | 294 | WP_002959510.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DLJ52_RS00915 (DLJ52_00915) | comGF | 155705..156142 (+) | 438 | WP_019781940.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DLJ52_RS00920 (DLJ52_00920) | comGG | 156120..156581 (+) | 462 | WP_019785527.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| DLJ52_RS00930 (DLJ52_00930) | - | 156783..157049 (+) | 267 | WP_002959516.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DLJ52_RS00935 (DLJ52_00935) | - | 157036..157311 (+) | 276 | WP_109982370.1 | helix-turn-helix transcriptional regulator | - |
| DLJ52_RS00940 (DLJ52_00940) | comGH | 157410..158363 (+) | 954 | WP_109990554.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DLJ52_RS00945 (DLJ52_00945) | - | 158426..159622 (+) | 1197 | WP_019771614.1 | acetate kinase | - |
| DLJ52_RS00950 (DLJ52_00950) | - | 160100..161005 (+) | 906 | WP_019769860.1 | LysR family transcriptional regulator | - |
| DLJ52_RS00955 (DLJ52_00955) | - | 161183..161449 (+) | 267 | WP_002959526.1 | ACT domain-containing protein | - |
| DLJ52_RS00960 (DLJ52_00960) | - | 161461..162798 (+) | 1338 | WP_002959528.1 | PFL family protein | - |
| DLJ52_RS00965 (DLJ52_00965) | - | 163037..163336 (-) | 300 | Protein_150 | hypothetical protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35504.32 Da Isoelectric Point: 4.1537
>NTDB_id=254065 DLJ52_RS00940 WP_109990554.1 157410..158363(+) (comGH) [Streptococcus sobrinus strain NIDR 6715-15]
MNFETIEKAYELLLENVQLLQNDLKTNSYDALIEQNAIYLDGKTENKTVLANDQALCDLNLSKEEWRRAYQFLFIKLAQS
EPLQANHQFTPDSIGFVLLFLLENLTKEASLDLLEIGSGTGNLAQTLLNNSSKGLNYLGLEVDDLLIDLSASIADVVGSD
ASFVQEDAVRPSLLKESDIIVSDLPVGYYPDDAIASRYQVAAQDDHTYAHHLLMEQSLKYLKANGFAIFLAPVNLLTSPQ
SDLLKAWLKGYADIVAVITLPEELFGNPANAKSIFVLQKQTVQAPEIFVYPLSDLQDRDKLLDFMENFKKWSAEYIL
MNFETIEKAYELLLENVQLLQNDLKTNSYDALIEQNAIYLDGKTENKTVLANDQALCDLNLSKEEWRRAYQFLFIKLAQS
EPLQANHQFTPDSIGFVLLFLLENLTKEASLDLLEIGSGTGNLAQTLLNNSSKGLNYLGLEVDDLLIDLSASIADVVGSD
ASFVQEDAVRPSLLKESDIIVSDLPVGYYPDDAIASRYQVAAQDDHTYAHHLLMEQSLKYLKANGFAIFLAPVNLLTSPQ
SDLLKAWLKGYADIVAVITLPEELFGNPANAKSIFVLQKQTVQAPEIFVYPLSDLQDRDKLLDFMENFKKWSAEYIL
Nucleotide
Download Length: 954 bp
>NTDB_id=254065 DLJ52_RS00940 WP_109990554.1 157410..158363(+) (comGH) [Streptococcus sobrinus strain NIDR 6715-15]
ATGAATTTTGAAACGATTGAAAAAGCTTATGAGCTGCTATTAGAGAATGTTCAGCTCTTGCAAAATGACTTGAAGACCAA
TAGTTACGATGCCTTGATTGAGCAAAATGCTATCTATCTGGATGGCAAAACTGAAAATAAGACGGTTTTGGCCAATGACC
AGGCCTTGTGTGACTTGAATTTGAGCAAGGAAGAGTGGCGGAGGGCCTACCAGTTTCTCTTTATTAAGCTGGCCCAGTCT
GAACCCTTGCAGGCCAACCACCAGTTTACGCCGGATAGTATTGGTTTTGTCCTGCTTTTCTTGCTGGAAAATCTGACCAA
GGAAGCAAGTCTGGACCTTCTGGAGATTGGCTCTGGAACAGGCAATCTAGCTCAAACCCTGCTCAATAACAGCAGTAAAG
GTCTGAATTATCTGGGGCTAGAAGTGGATGATTTGCTGATTGATTTGTCAGCCAGCATCGCTGATGTTGTGGGATCTGAC
GCTAGTTTCGTGCAGGAGGATGCGGTTCGTCCTTCCCTGCTCAAGGAGAGCGACATTATTGTCAGCGATCTTCCCGTTGG
CTATTATCCCGATGATGCTATTGCCAGTCGCTACCAGGTGGCTGCCCAGGATGACCACACCTATGCCCATCACCTGCTTA
TGGAGCAGTCGCTCAAGTACTTGAAGGCCAATGGTTTTGCCATTTTCTTGGCTCCAGTCAATCTTCTGACCAGTCCCCAG
AGTGATCTGCTCAAGGCTTGGCTCAAGGGTTATGCTGACATCGTGGCCGTCATTACCCTACCTGAGGAACTTTTTGGCAA
TCCGGCCAATGCCAAGTCTATCTTTGTCCTGCAGAAGCAGACTGTTCAGGCGCCCGAGATCTTCGTCTATCCGCTGAGTG
ATTTGCAAGACCGAGATAAGCTCTTGGATTTTATGGAAAATTTCAAGAAATGGTCAGCTGAATATATTCTTTGA
ATGAATTTTGAAACGATTGAAAAAGCTTATGAGCTGCTATTAGAGAATGTTCAGCTCTTGCAAAATGACTTGAAGACCAA
TAGTTACGATGCCTTGATTGAGCAAAATGCTATCTATCTGGATGGCAAAACTGAAAATAAGACGGTTTTGGCCAATGACC
AGGCCTTGTGTGACTTGAATTTGAGCAAGGAAGAGTGGCGGAGGGCCTACCAGTTTCTCTTTATTAAGCTGGCCCAGTCT
GAACCCTTGCAGGCCAACCACCAGTTTACGCCGGATAGTATTGGTTTTGTCCTGCTTTTCTTGCTGGAAAATCTGACCAA
GGAAGCAAGTCTGGACCTTCTGGAGATTGGCTCTGGAACAGGCAATCTAGCTCAAACCCTGCTCAATAACAGCAGTAAAG
GTCTGAATTATCTGGGGCTAGAAGTGGATGATTTGCTGATTGATTTGTCAGCCAGCATCGCTGATGTTGTGGGATCTGAC
GCTAGTTTCGTGCAGGAGGATGCGGTTCGTCCTTCCCTGCTCAAGGAGAGCGACATTATTGTCAGCGATCTTCCCGTTGG
CTATTATCCCGATGATGCTATTGCCAGTCGCTACCAGGTGGCTGCCCAGGATGACCACACCTATGCCCATCACCTGCTTA
TGGAGCAGTCGCTCAAGTACTTGAAGGCCAATGGTTTTGCCATTTTCTTGGCTCCAGTCAATCTTCTGACCAGTCCCCAG
AGTGATCTGCTCAAGGCTTGGCTCAAGGGTTATGCTGACATCGTGGCCGTCATTACCCTACCTGAGGAACTTTTTGGCAA
TCCGGCCAATGCCAAGTCTATCTTTGTCCTGCAGAAGCAGACTGTTCAGGCGCCCGAGATCTTCGTCTATCCGCTGAGTG
ATTTGCAAGACCGAGATAAGCTCTTGGATTTTATGGAAAATTTCAAGAAATGGTCAGCTGAATATATTCTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGH | Streptococcus mutans UA159 |
64.984 |
100 |
0.65 |
| comGH | Streptococcus mutans UA140 |
64.669 |
100 |
0.647 |