Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DKG71_RS38090 Genome accession   NZ_CP029541
Coordinates   8759673..8760314 (+) Length   213 a.a.
NCBI ID   WP_018088630.1    Uniprot ID   A0A640TA39
Organism   Streptomyces sp. NEAU-S7GS2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8754673..8765314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG71_RS38055 (DKG71_38055) - 8755096..8755563 (+) 468 WP_109894779.1 hypothetical protein -
  DKG71_RS38060 (DKG71_38060) - 8755594..8755899 (-) 306 WP_109894781.1 DUF1330 domain-containing protein -
  DKG71_RS38065 (DKG71_38065) - 8756088..8756990 (+) 903 WP_109894783.1 LysR family transcriptional regulator -
  DKG71_RS38080 (DKG71_38080) - 8757622..8758212 (-) 591 WP_109894785.1 heme-binding protein -
  DKG71_RS38085 (DKG71_38085) - 8758474..8759676 (+) 1203 WP_109894787.1 sensor histidine kinase -
  DKG71_RS38090 (DKG71_38090) vraR 8759673..8760314 (+) 642 WP_018088630.1 response regulator transcription factor Regulator
  DKG71_RS38095 (DKG71_38095) - 8760573..8761215 (+) 643 Protein_7502 vitamin K epoxide reductase family protein -
  DKG71_RS38100 (DKG71_38100) - 8761692..8762114 (+) 423 WP_109894789.1 hypothetical protein -
  DKG71_RS38105 (DKG71_38105) - 8762484..8763545 (+) 1062 WP_109894791.1 serine hydrolase -
  DKG71_RS38110 (DKG71_38110) - 8763699..8764361 (-) 663 WP_109894793.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22740.12 Da        Isoelectric Point: 6.7614

>NTDB_id=254043 DKG71_RS38090 WP_018088630.1 8759673..8760314(+) (vraR) [Streptomyces sp. NEAU-S7GS2]
MTAHRAPVRILVCDDHAVVRAGLLALLDSAPDIEVVGEAGTGEEALALAAKLTPDVVLMDLQLGEGIDGVETTRRLTSVP
GASLHVLVLTTYDTDADITRAIEAGATGYLLKAERPDELFAAIHSAAEGRTALSPPVASRVMANLRRPRPTLTDRERDIL
AQLARGIGNRDIARALHISEATVKTHLRRIYDKLGVDTRAGAVAVAKERRLVP

Nucleotide


Download         Length: 642 bp        

>NTDB_id=254043 DKG71_RS38090 WP_018088630.1 8759673..8760314(+) (vraR) [Streptomyces sp. NEAU-S7GS2]
ATGACCGCCCATCGCGCTCCCGTGCGCATCCTGGTCTGCGACGATCACGCCGTCGTACGGGCCGGGCTGCTCGCCCTGCT
CGACAGCGCCCCGGACATCGAGGTCGTCGGGGAGGCAGGCACCGGCGAGGAGGCGCTCGCGCTGGCCGCGAAGCTCACCC
CGGACGTGGTGCTGATGGATCTGCAACTGGGCGAGGGCATCGACGGCGTGGAGACCACCCGTCGCCTCACCTCCGTCCCT
GGAGCCTCCCTCCACGTCCTGGTCCTCACCACCTACGACACGGACGCCGACATCACCCGCGCCATCGAGGCGGGCGCCAC
GGGCTATCTGCTCAAAGCTGAGCGCCCCGATGAGCTCTTCGCCGCGATCCACTCCGCCGCCGAGGGACGTACCGCCCTGT
CCCCGCCGGTCGCCAGCCGTGTCATGGCCAATCTGCGCCGGCCCCGGCCCACCCTCACCGACCGCGAACGCGACATCCTG
GCCCAGCTCGCCCGCGGCATCGGCAACCGGGACATCGCCCGGGCCCTCCACATCAGCGAGGCCACGGTCAAGACCCATCT
GCGCCGCATCTACGACAAGCTCGGTGTGGACACCCGCGCGGGCGCCGTGGCGGTCGCGAAGGAGCGGCGACTGGTGCCGT
GA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(151-206)

Response regulator receiver domain (Response_reg)

(10-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A640TA39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.863

99.061

0.385
  degU Bacillus subtilis subsp. subtilis str. 168

36.986

100

0.38