Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   CTI08_RS01700 Genome accession   NZ_CP024576
Coordinates   364828..365568 (+) Length   246 a.a.
NCBI ID   WP_000076099.1    Uniprot ID   A0A9P2QDS6
Organism   Acinetobacter baumannii strain AbPK1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359828..370568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTI08_RS01685 (CTI08_01685) ponA 360415..362970 (-) 2556 WP_000736667.1 penicillin-binding protein PBP1a -
  CTI08_RS01690 (CTI08_01690) pilM 363132..364190 (+) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene
  CTI08_RS01695 (CTI08_01695) pilN 364190..364831 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  CTI08_RS01700 (CTI08_01700) pilO 364828..365568 (+) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  CTI08_RS01705 (CTI08_01705) pilP 365579..366106 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  CTI08_RS01710 (CTI08_01710) pilQ 366169..368334 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  CTI08_RS01715 (CTI08_01715) aroK 368346..368915 (+) 570 WP_000643712.1 shikimate kinase AroK -
  CTI08_RS01720 (CTI08_01720) aroB 368944..370026 (+) 1083 WP_001193991.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27801.55 Da        Isoelectric Point: 4.8357

>NTDB_id=254022 CTI08_RS01700 WP_000076099.1 364828..365568(+) (pilO) [Acinetobacter baumannii strain AbPK1]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=254022 CTI08_RS01700 WP_000076099.1 364828..365568(+) (pilO) [Acinetobacter baumannii strain AbPK1]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment