Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DKG71_RS23940 Genome accession   NZ_CP029541
Coordinates   5596084..5597496 (-) Length   470 a.a.
NCBI ID   WP_018093005.1    Uniprot ID   A0A640TH32
Organism   Streptomyces sp. NEAU-S7GS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5591084..5602496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG71_RS23920 (DKG71_23920) - 5591912..5592613 (-) 702 WP_109891726.1 response regulator transcription factor -
  DKG71_RS23925 (DKG71_23925) - 5592896..5594224 (+) 1329 WP_109891728.1 globin domain-containing protein -
  DKG71_RS23930 (DKG71_23930) - 5594393..5594809 (+) 417 WP_202466676.1 pyridoxamine 5'-phosphate oxidase family protein -
  DKG71_RS23935 (DKG71_23935) disA 5594834..5595958 (-) 1125 WP_026170238.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  DKG71_RS23940 (DKG71_23940) radA 5596084..5597496 (-) 1413 WP_018093005.1 DNA repair protein RadA Machinery gene
  DKG71_RS23945 (DKG71_23945) - 5597747..5599498 (+) 1752 WP_109891730.1 sigma-70 family RNA polymerase sigma factor -
  DKG71_RS23950 (DKG71_23950) - 5599550..5600422 (-) 873 WP_109891732.1 hypothetical protein -
  DKG71_RS23955 (DKG71_23955) - 5600500..5601426 (+) 927 WP_093643680.1 Ppx/GppA phosphatase family protein -
  DKG71_RS23960 (DKG71_23960) - 5601599..5602423 (+) 825 WP_174876353.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49408.60 Da        Isoelectric Point: 8.0042

>NTDB_id=254012 DKG71_RS23940 WP_018093005.1 5596084..5597496(-) (radA) [Streptomyces sp. NEAU-S7GS2]
MATRKSSGKERPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAPGRVTTAALPIGQVDGKQATARSTGVPE
LDRVLGGGLVPGAVALLAGEPGVGKSTLLLDVAAKAASDAHRTLYVTGEESASQVRLRADRIGALDDHLYLAAETDLSAV
LGHLDTVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGIIGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAARLGFTHALVPSDPGKIPDGMRVLEVADVGQALSVLPKRVRREAPQEEGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=254012 DKG71_RS23940 WP_018093005.1 5596084..5597496(-) (radA) [Streptomyces sp. NEAU-S7GS2]
ATGGCAACGCGTAAATCGTCGGGCAAGGAGCGTCCCTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCGAAATGGCT
CGGCCGCTGTCCCGAGTGCCAGGCATGGGGCACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTGCGCACCACCGCGCCCG
GCCGCGTCACCACCGCCGCCCTGCCCATCGGCCAGGTCGACGGCAAGCAGGCCACCGCCCGCTCGACGGGCGTGCCCGAG
CTCGACCGCGTCCTGGGCGGCGGGCTGGTCCCCGGCGCCGTCGCCCTGCTGGCCGGCGAGCCCGGTGTGGGCAAATCCAC
CCTGCTGCTGGACGTCGCCGCCAAGGCCGCCTCCGACGCCCACCGCACGCTGTATGTCACCGGCGAGGAATCCGCGAGCC
AGGTACGGCTGCGCGCCGACCGCATCGGCGCCCTCGACGACCATCTGTATCTGGCCGCCGAAACCGACCTGTCCGCGGTG
CTCGGCCATCTGGACACGGTCAAGCCGTCGCTGCTGATCCTCGACTCGGTGCAGACCGTCGCCTCCCCCGAGATCGAAGG
GGCGCCCGGCGGTATGGCCCAGGTCCGCGAAGTGGCCGGCGCGCTGATCCGGGCCTCCAAGGAACGCGGTATGGCCACCC
TCCTGGTGGGCCATGTCACCAAGGACGGCGCCATCGCCGGACCGCGCCTCCTGGAGCATCTCGTCGATGTCGTCCTCCAC
TTCGAAGGCGACCGGCACGCCCGGCTCCGCCTGGTCCGCGGCGTCAAGAACCGCTACGGCACCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAAGGCATCATCGGCCTCGCCGACCCCTCCGGCCTCTTCCTGACCCGCCGCGCCGAACCGGTGC
CCGGCACCTGCCTGACCGTGACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTGACCGTCGACTCCCAG
ATCCCCTCTCCCCGGCGCACCACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTGGAACAGCGCGG
CCGGATCAGCGCCCTGGGCAAACGCGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTGACCGAGCCCGCCGCGGACC
TCGCCGTGGCCCTCGCACTGGCCAGCGCGGCCAGCGACACCCCCCTGCCGAAGAACCTGGTCGCCATCGGCGAAGTGGGG
CTCGCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCCGGCTGTCCGAAGCGGCCCGCCTCGGCTTCACCCACGCCCT
CGTCCCCTCCGACCCCGGCAAGATCCCCGACGGGATGCGGGTGCTGGAGGTCGCCGACGTCGGACAGGCACTCAGCGTGC
TGCCCAAGCGGGTCCGCCGGGAGGCCCCACAGGAAGAGGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

AAA domain (AAA_25)

(79-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A640TH32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

43.016

95.957

0.413
  radA Streptococcus pneumoniae D39

43.016

95.957

0.413
  radA Streptococcus pneumoniae R6

43.016

95.957

0.413
  radA Streptococcus pneumoniae Rx1

43.016

95.957

0.413
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.794

95.957

0.411
  radA Streptococcus mitis SK321

44.393

91.064

0.404
  radA Streptococcus mitis NCTC 12261

44.393

91.064

0.404

Multiple sequence alignment