Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DK181_RS10700 Genome accession   NZ_CP029490
Coordinates   2185306..2186400 (+) Length   364 a.a.
NCBI ID   WP_028798460.1    Uniprot ID   A0ABN5LR71
Organism   Streptococcus sobrinus strain SL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2180306..2191400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS10675 (DK182_10675) pgsA 2180828..2181370 (-) 543 WP_002961266.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DK181_RS10680 (DK182_10680) - 2181382..2182239 (-) 858 WP_019785489.1 helix-turn-helix domain-containing protein -
  DK181_RS10685 (DK182_10685) yfmH 2182300..2183568 (-) 1269 WP_019795299.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  DK181_RS10690 (DK182_10690) yfmF 2183570..2184817 (-) 1248 WP_019795300.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  DK181_RS10695 (DK182_10695) - 2184897..2185304 (+) 408 WP_002961272.1 RNA-binding S4 domain-containing protein -
  DK181_RS10700 (DK182_10700) recF 2185306..2186400 (+) 1095 WP_028798460.1 DNA replication/repair protein RecF Machinery gene
  DK181_RS10705 (DK182_10705) guaB 2186639..2188120 (-) 1482 WP_019769643.1 IMP dehydrogenase -
  DK181_RS10710 (DK182_10710) trpS 2188317..2189342 (-) 1026 WP_002962168.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41499.34 Da        Isoelectric Point: 7.2939

>NTDB_id=253792 DK181_RS10700 WP_028798460.1 2185306..2186400(+) (recF) [Streptococcus sobrinus strain SL1]
MWLESISLKNFRNYTEMTADFSSGLNVFLGQNAQGKTNFLEAIYFLALTRSHRTRSDKELINFKAKDLSVSGLLRRRGGK
LPLEIDLSDKGRTTKLNYLKQIKLSDYVGNMTVVLFAPEDLQLVKGAPSLRRKFLDIDLGQIKPVYLADLSNYNHVLKQR
NAYLKAAETIDKDYLAVIDEQLADFGSRVMEHRYQFVQDLTVEADKHHHIISNQLEHLKISYQSSVKFQEPAEIKQNFLD
QLAKSFSRDSFKKNTGVGPHRDDLTFFINDMNASFGSQGQQRSLILSLKLAEIELIKTITGDSPILLLDDVMSELDNHRQ
LRLLDGIKENVQTFITTTSLDHLQGLPDNLKIFTVDQGTIKTNE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=253792 DK181_RS10700 WP_028798460.1 2185306..2186400(+) (recF) [Streptococcus sobrinus strain SL1]
ATGTGGTTAGAATCTATTTCCCTCAAAAATTTCCGTAATTATACTGAGATGACTGCTGATTTTTCTAGCGGTCTCAATGT
TTTCCTCGGCCAAAACGCTCAGGGTAAGACCAATTTTCTCGAAGCCATTTATTTTCTAGCCCTAACTCGTAGTCACAGAA
CCCGCTCAGATAAGGAGCTAATCAATTTTAAGGCCAAGGACCTGTCTGTCTCTGGTCTTTTACGAAGAAGGGGAGGCAAG
CTTCCTCTAGAAATTGACCTATCTGATAAGGGTCGAACAACCAAGCTTAACTACCTCAAACAAATCAAATTATCCGACTA
TGTTGGCAATATGACTGTGGTTCTCTTTGCCCCTGAAGATTTACAGTTGGTAAAGGGAGCCCCCAGTCTCAGGCGGAAAT
TTTTAGACATTGATTTGGGTCAAATCAAGCCCGTCTACCTGGCCGACCTCTCCAATTATAATCATGTTTTAAAACAAAGA
AATGCCTACCTCAAGGCAGCAGAGACCATTGATAAGGATTATTTGGCAGTCATTGATGAACAACTAGCTGATTTTGGCAG
TCGGGTTATGGAGCATCGTTATCAATTTGTCCAAGACTTGACAGTGGAAGCTGATAAGCACCACCATATCATCTCCAACC
AGCTGGAGCATCTAAAAATTTCCTATCAGTCATCGGTTAAATTTCAAGAACCAGCCGAGATTAAGCAAAATTTCCTAGAC
CAATTGGCCAAATCCTTTAGCCGAGATAGCTTCAAAAAGAATACCGGTGTCGGACCGCACCGCGACGATCTGACCTTTTT
TATCAACGATATGAACGCTTCCTTTGGTAGCCAAGGTCAACAACGCAGCTTAATTTTATCTCTAAAACTGGCAGAAATTG
AGCTGATTAAAACCATAACCGGAGATAGTCCAATTCTTTTATTGGATGATGTTATGAGTGAGCTTGACAACCACCGTCAA
CTTCGTTTATTGGATGGTATCAAGGAAAACGTGCAAACCTTTATTACCACAACTAGTTTGGACCACTTACAAGGTTTACC
AGATAACTTAAAAATCTTTACAGTTGATCAGGGTACTATAAAAACCAACGAGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.014

99.725

0.648
  recF Bacillus subtilis subsp. subtilis str. 168

43.678

95.604

0.418