Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DK181_RS05035 Genome accession   NZ_CP029490
Coordinates   1053335..1053763 (+) Length   142 a.a.
NCBI ID   WP_002959424.1    Uniprot ID   A0ABM6W503
Organism   Streptococcus sobrinus strain SL1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048335..1058763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS05015 (DK182_05015) - 1048764..1049207 (+) 444 WP_002959430.1 hypothetical protein -
  DK181_RS05020 (DK182_05020) - 1049207..1050052 (+) 846 WP_002959428.1 ABC transporter ATP-binding protein -
  DK181_RS05025 (DK182_05025) - 1050033..1050821 (+) 789 WP_002959426.1 ABC transporter permease subunit -
  DK181_RS05030 (DK182_05030) - 1051018..1053113 (-) 2096 Protein_945 surface-anchored 5'-nucleotidase -
  DK181_RS05035 (DK182_05035) rcrR 1053335..1053763 (+) 429 WP_002959424.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DK181_RS05040 (DK182_05040) rcrP 1053771..1055600 (+) 1830 WP_002959422.1 ABC transporter ATP-binding protein Regulator
  DK181_RS05045 (DK182_05045) rcrQ 1055590..1057338 (+) 1749 WP_028798403.1 ABC transporter ATP-binding protein Regulator
  DK181_RS05050 (DK182_05050) - 1057696..1058331 (+) 636 WP_002959419.1 ABC transporter permease -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16696.60 Da        Isoelectric Point: 10.3649

>NTDB_id=253744 DK181_RS05035 WP_002959424.1 1053335..1053763(+) (rcrR) [Streptococcus sobrinus strain SL1]
MKDPFDIFRTFINTMETSVQELAKKHGVEHLAGPQGFTVSYLFENRDKEIFIKDIEERLRISKSVASNLIKRMEKNGFIQ
VKPSLKDKRYKQIVLTELGLDKAEKIKVFRSKIEEIILKDIDKKNLEVARRVFLQIKTNLEK

Nucleotide


Download         Length: 429 bp        

>NTDB_id=253744 DK181_RS05035 WP_002959424.1 1053335..1053763(+) (rcrR) [Streptococcus sobrinus strain SL1]
ATGAAAGATCCCTTTGACATTTTCAGAACTTTCATCAATACTATGGAAACTAGTGTCCAAGAGTTGGCCAAAAAGCATGG
GGTGGAGCATTTAGCTGGCCCCCAAGGCTTTACGGTCTCTTATCTTTTTGAAAACCGAGACAAAGAAATTTTCATAAAAG
ACATTGAAGAGAGGCTAAGAATTTCCAAATCTGTCGCTAGTAATCTCATCAAACGGATGGAGAAGAATGGCTTTATCCAA
GTCAAGCCTTCCCTCAAGGACAAACGCTATAAGCAGATTGTTCTGACAGAACTTGGCCTTGATAAGGCTGAGAAGATTAA
GGTATTCCGTTCCAAAATCGAAGAGATTATTCTTAAGGATATTGATAAGAAGAATCTGGAAGTTGCCCGCCGGGTTTTTT
TGCAAATCAAAACTAATTTAGAAAAGTAG

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(46-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

64.789

100

0.648