Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DK181_RS05040 Genome accession   NZ_CP029490
Coordinates   1053771..1055600 (+) Length   609 a.a.
NCBI ID   WP_002959422.1    Uniprot ID   A0ABM6W5I9
Organism   Streptococcus sobrinus strain SL1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1048771..1060600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK181_RS05020 (DK182_05020) - 1049207..1050052 (+) 846 WP_002959428.1 ABC transporter ATP-binding protein -
  DK181_RS05025 (DK182_05025) - 1050033..1050821 (+) 789 WP_002959426.1 ABC transporter permease subunit -
  DK181_RS05030 (DK182_05030) - 1051018..1053113 (-) 2096 Protein_945 surface-anchored 5'-nucleotidase -
  DK181_RS05035 (DK182_05035) rcrR 1053335..1053763 (+) 429 WP_002959424.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DK181_RS05040 (DK182_05040) rcrP 1053771..1055600 (+) 1830 WP_002959422.1 ABC transporter ATP-binding protein Regulator
  DK181_RS05045 (DK182_05045) rcrQ 1055590..1057338 (+) 1749 WP_028798403.1 ABC transporter ATP-binding protein Regulator
  DK181_RS05050 (DK182_05050) - 1057696..1058331 (+) 636 WP_002959419.1 ABC transporter permease -
  DK181_RS05055 (DK182_05055) - 1058321..1059235 (+) 915 WP_002959417.1 glycine betaine ABC transporter substrate-binding protein -
  DK181_RS05060 (DK182_05060) - 1059242..1059991 (+) 750 WP_019770237.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 67819.69 Da        Isoelectric Point: 9.6862

>NTDB_id=253745 DK181_RS05040 WP_002959422.1 1053771..1055600(+) (rcrP) [Streptococcus sobrinus strain SL1]
MFKIFKRLSAKEWGMIILSTIFILLAVWMDLKTPEYMSKITTLLQNKGTTTSDIMDPGSKMLLFSFGSFLMAVFVGFLAA
RTAASFTTRLRSDIFNQVADYSQAEIKRFSVPSLLTRTTNDLTQLQIMITMGMQVVTRGPIMAIWALTKIWGKSGSWTQA
VGVAVLIVLILLSVLLFVAFPRQRKVQGLTDALNSTTRESLTGVRVVRAYNAEDYQDKKFRQENESLTKLNLFVYRLMSL
MNPVMTMVFSGLTLAIYWIGAHLLNDVKVPTVDKTSPMVMKMVAEAAKAVKDRVSIFSDMVVFSSYAMQVVIGFMMMVAI
FIILPRALVSAKRINEVLALSPSVKFKNQSKPDNGQKGQVEVHDVSFRYSKNSAAAIEHVSFKAEKGQTVAFIGSTGSGK
STLVNLIPRFYDATEGWIKVDGVKVEDYSHDDLNNKVGYIPQTAVLFSGTIRSNMQFGRSAQGHLSDDDIWEALELAQAK
DFVESKDKGLDTEVAQGGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELNKKTSDLTKLIVAQRIS
TIMDADQILVLDQGKVVGQGTHKELLASNSVYQEIAYSQLSKEELENED

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=253745 DK181_RS05040 WP_002959422.1 1053771..1055600(+) (rcrP) [Streptococcus sobrinus strain SL1]
ATGTTCAAAATTTTTAAACGCTTAAGCGCAAAAGAATGGGGCATGATTATTCTGTCGACCATTTTTATTTTGCTGGCGGT
TTGGATGGATTTGAAGACACCTGAATACATGTCTAAAATCACCACCCTCCTGCAAAATAAGGGGACGACAACCTCTGACA
TCATGGACCCAGGTTCTAAAATGCTCCTCTTCTCCTTTGGTAGCTTTTTGATGGCTGTCTTTGTTGGTTTCCTGGCTGCG
AGAACGGCGGCTAGTTTCACGACTCGCTTGCGCTCTGATATTTTCAACCAAGTGGCCGACTATTCGCAAGCCGAAATCAA
ACGGTTCTCCGTGCCCAGTCTCTTGACCAGGACCACCAATGACCTGACCCAGCTACAAATCATGATTACCATGGGGATGC
AGGTGGTTACTCGTGGGCCAATTATGGCCATCTGGGCTTTGACCAAGATTTGGGGCAAGAGTGGCTCCTGGACTCAGGCA
GTTGGAGTAGCGGTTCTAATCGTTCTCATTCTCTTGTCTGTCCTTCTCTTTGTTGCCTTCCCACGTCAACGTAAGGTTCA
AGGCTTGACCGATGCCCTCAACTCAACCACTCGGGAATCTCTAACGGGTGTTCGGGTTGTTCGGGCCTACAATGCTGAGG
ATTACCAGGACAAGAAGTTCCGTCAAGAAAATGAAAGCTTGACCAAACTCAACCTCTTTGTTTACCGGCTCATGTCTCTG
ATGAACCCAGTTATGACCATGGTTTTCAGCGGTTTGACGCTAGCGATTTATTGGATTGGCGCCCATCTGCTCAACGACGT
CAAGGTTCCAACAGTGGATAAGACCAGCCCAATGGTCATGAAGATGGTAGCAGAAGCGGCCAAGGCTGTTAAGGACCGGG
TTTCGATCTTTTCTGATATGGTTGTCTTCTCATCTTATGCCATGCAGGTCGTTATTGGTTTCATGATGATGGTTGCCATC
TTCATTATCCTGCCACGGGCTCTGGTGTCTGCTAAGCGGATTAATGAAGTTCTGGCTCTCAGTCCATCTGTTAAGTTTAA
GAACCAATCCAAGCCTGATAATGGCCAAAAGGGCCAAGTGGAAGTGCACGATGTTTCCTTCCGTTACAGCAAGAATTCAG
CTGCGGCTATCGAGCACGTTTCTTTCAAGGCTGAAAAAGGTCAAACCGTGGCCTTTATCGGGTCGACTGGTTCTGGTAAA
TCGACCCTGGTCAATCTGATTCCTCGGTTCTATGATGCCACCGAAGGTTGGATCAAGGTTGACGGTGTCAAGGTTGAAGA
CTACAGCCACGATGACCTCAACAATAAGGTCGGTTATATCCCGCAAACCGCTGTCCTCTTTAGCGGTACCATCCGTTCCA
ATATGCAGTTTGGTCGGAGTGCTCAGGGTCACTTGAGCGATGATGACATCTGGGAGGCTCTCGAATTGGCTCAAGCCAAG
GACTTTGTCGAAAGTAAGGATAAGGGCCTGGATACAGAAGTAGCCCAAGGTGGGACCAACTTCTCTGGTGGTCAAAAGCA
ACGTTTGGCTATTGCCCGTGCCTTGGCTCGTAAACCAGAAATCCTTATCTTTGATGATTCCTTCTCAGCATTGGACTACA
AGACAGACCGCATCCTGCGTGAGGAACTCAATAAGAAGACTAGCGACTTGACCAAGTTGATTGTCGCTCAACGGATTTCA
ACCATTATGGACGCTGACCAAATCTTGGTTCTGGACCAAGGTAAGGTGGTCGGTCAAGGTACCCACAAGGAACTCTTGGC
CTCAAATTCTGTCTACCAAGAAATTGCCTATTCACAACTTTCAAAGGAGGAATTGGAAAATGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(378-527)

ABC transporter transmembrane region (ABC_membrane)

(16-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

83.526

99.672

0.833