Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   DKG78_RS09565 Genome accession   NZ_CP029466
Coordinates   1929074..1929694 (-) Length   206 a.a.
NCBI ID   WP_003154004.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HM618     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1924074..1934694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG78_RS09535 (DKG78_09705) - 1924939..1925373 (+) 435 WP_003154017.1 dUTP diphosphatase -
  DKG78_RS20065 (DKG78_09710) - 1925461..1925567 (-) 107 Protein_1843 DUF4177 domain-containing protein -
  DKG78_RS09540 (DKG78_09715) - 1925779..1926600 (+) 822 WP_192452998.1 poly-gamma-glutamate hydrolase family protein -
  DKG78_RS09545 - 1926709..1926858 (+) 150 WP_007410334.1 hypothetical protein -
  DKG78_RS09550 (DKG78_09720) - 1926845..1927675 (+) 831 WP_007410333.1 prohibitin family protein -
  DKG78_RS09555 (DKG78_09725) - 1927703..1928152 (-) 450 WP_052827479.1 YndM family protein -
  DKG78_RS09560 (DKG78_09730) - 1928306..1928734 (+) 429 WP_003154006.1 hypothetical protein -
  DKG78_RS09565 (DKG78_09735) dinR/lexA 1929074..1929694 (-) 621 WP_003154004.1 transcriptional repressor LexA Regulator
  DKG78_RS09570 (DKG78_09740) yneA 1929851..1930162 (+) 312 WP_003154001.1 cell division suppressor protein YneA -
  DKG78_RS09575 (DKG78_09745) - 1930178..1930828 (+) 651 WP_132105960.1 recombinase family protein -
  DKG78_RS09580 (DKG78_09750) - 1930897..1931130 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  DKG78_RS09585 (DKG78_09755) recP/tkt 1931297..1933300 (+) 2004 WP_032865999.1 transketolase Machinery gene
  DKG78_RS09590 (DKG78_09760) sirA 1933452..1933898 (+) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  DKG78_RS09595 (DKG78_09765) - 1933984..1934202 (+) 219 WP_003153994.1 YneF family protein -
  DKG78_RS09600 (DKG78_09770) - 1934276..1934449 (-) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23055.65 Da        Isoelectric Point: 5.3816

>NTDB_id=253533 DKG78_RS09565 WP_003154004.1 1929074..1929694(-) (dinR/lexA) [Bacillus amyloliquefaciens strain HM618]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVHIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=253533 DKG78_RS09565 WP_003154004.1 1929074..1929694(-) (dinR/lexA) [Bacillus amyloliquefaciens strain HM618]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACGGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCTACTAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCACATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATTGACGCCGGTA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTTATCGGCGTATTCAGAGCCGTACATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927