Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | A388_RS02005 | Genome accession | NZ_CP024418 |
| Coordinates | 391757..392230 (+) | Length | 157 a.a. |
| NCBI ID | WP_001214060.1 | Uniprot ID | A0A0J0ZM89 |
| Organism | Acinetobacter baumannii strain A388 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 386757..397230
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A388_RS01985 (A388_00369) | - | 387220..389325 (-) | 2106 | WP_001117590.1 | RelA/SpoT family protein | - |
| A388_RS19745 | - | 389365..389495 (-) | 131 | Protein_367 | hypothetical protein | - |
| A388_RS01990 (A388_00370) | rpoZ | 389534..389812 (-) | 279 | WP_000135049.1 | DNA-directed RNA polymerase subunit omega | - |
| A388_RS01995 (A388_00371) | gmk | 389885..390514 (-) | 630 | WP_000015937.1 | guanylate kinase | - |
| A388_RS02000 (A388_00372) | ispH | 390637..391587 (+) | 951 | WP_000407064.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| A388_RS02005 (A388_00373) | fimU | 391757..392230 (+) | 474 | WP_001214060.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| A388_RS02010 (A388_00374) | pilV | 392224..392784 (+) | 561 | WP_002194578.1 | type IV pilus modification protein PilV | Machinery gene |
| A388_RS02015 (A388_00375) | pilW | 392785..393786 (+) | 1002 | WP_000079197.1 | PilW family protein | Machinery gene |
| A388_RS02020 (A388_00376) | pilX | 393783..394601 (+) | 819 | WP_000149374.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16883.50 Da Isoelectric Point: 8.5355
>NTDB_id=253471 A388_RS02005 WP_001214060.1 391757..392230(+) (fimU) [Acinetobacter baumannii strain A388]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=253471 A388_RS02005 WP_001214060.1 391757..392230(+) (fimU) [Acinetobacter baumannii strain A388]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
98.726 |
100 |
0.987 |