Detailed information NTG0253422

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: CRH16_RS09670
• Genome accession: NZ_CP024412
• Coordinates: 1897323..1898519 (-)
• Length: 398 a.a.
• NCBI ID: WP_005711777.1
• Uniprot ID: B8F826
• Organism: Glaesserella parasuis strain SH0104
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1892323..1903519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CRH16_RS09645	-	1893039..1893428 (-)	390	WP_010787002.1	SufE family protein	-
CRH16_RS09650	clpP	1893529..1894110 (+)	582	WP_010787003.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	-
CRH16_RS09655	clpX	1894117..1895367 (+)	1251	WP_112063124.1	ATP-dependent protease ATP-binding subunit ClpX	-
CRH16_RS09660	dapE	1895441..1896574 (-)	1134	WP_005711772.1	succinyl-diaminopimelate desuccinylase	-
CRH16_RS09665	-	1896658..1897326 (-)	669	WP_015940025.1	prepilin peptidase	-
CRH16_RS09670	pilC	1897323..1898519 (-)	1197	WP_005711777.1	type II secretion system F family protein	Machinery gene
CRH16_RS09675	pilB	1898512..1899897 (-)	1386	WP_015940026.1	GspE/PulE family protein	Machinery gene
CRH16_RS09680	-	1900250..1900615 (-)	366	WP_015940027.1	endonuclease domain-containing protein	-
CRH16_RS09685	pilA	1900888..1901340 (-)	453	WP_010787008.1	pilin	Machinery gene
CRH16_RS09690	radA	1901528..1902904 (+)	1377	WP_021114521.1	DNA repair protein RadA	-

Sequence

Protein

• Length: 398 a.a.
• Molecular weight: 45575.38 Da
• Isoelectric Point: 10.1129

>NTDB_id=253422 CRH16_RS09670 WP_005711777.1 1897323..1898519(-) (pilC) [Glaesserella parasuis strain SH0104]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKRLQQKGYSQLSISRHFALPTAPKKEEINQFMQQLALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFKKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSHFLQHSILTLIILCVLCFLLIHILNKKTDL
IKRLKFIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQGSLATTLTYLKQGYRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE

Nucleotide

• Length: 1197 bp

>NTDB_id=253422 CRH16_RS09670 WP_005711777.1 1897323..1898519(-) (pilC) [Glaesserella parasuis strain SH0104]
ATGAATAACATTTACGAATTTCAATGGAAAGGACGCAACCGCTTTGGGCAAAAGCAGACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAGAAACGGTTGCAACAAAAAGGATACAGCCAGTTAAGCATTAGCCGACATTTTGCCTTGCCGACTG
CACCAAAAAAGGAAGAAATTAATCAATTTATGCAACAGTTAGCCTTATTAATTCAAGCTAAAATCCCCCTAAAACAGAGT
TTAGTGATGTTGCTTGAAACCTGCCAAAATCGCACTTTTTACCGTTGGCAACAAGAAACAATCCGCTTGATTGAAGCCGG
CTTTGCGTTATCCGTTGCCTTTAAAAAACAGGGAAAATATATTAATCCACAAGAAATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTAATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTGCTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGTTCAAAAGGAAAATCACTCCCTCTAATTACCGAAATACTCTTTAGCCTATCCCATTTTCTAC
AACACTCTATTTTAACACTAATTATTTTATGTGTATTATGTTTTCTATTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTAAACGCCTAAAGTTTATTATATTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAAGGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGCTATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGGTTATATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (63-186)

• Type II secretion system (T2SS), protein F (T2SSF) (267-389)

3D structure

• AlphaFold DB: B8F826

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	100	100	1
pilC	Haemophilus influenzae 86-028NP	38.155	100	0.384
pilC	Haemophilus influenzae Rd KW20	38.155	100	0.384