Detailed information
Bioinformatically predicted
Overview
| Name | comC | Type | Machinery gene |
| Locus tag | CRH16_RS07485 | Genome accession | NZ_CP024412 |
| Coordinates | 1441283..1441813 (-) | Length | 176 a.a. |
| NCBI ID | WP_112063049.1 | Uniprot ID | - |
| Organism | Glaesserella parasuis strain SH0104 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1436283..1446813
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRH16_RS07450 | trxA | 1436442..1436756 (-) | 315 | WP_005712493.1 | thioredoxin | - |
| CRH16_RS07455 | - | 1437053..1437682 (-) | 630 | WP_005712495.1 | LysE family transporter | - |
| CRH16_RS07460 | - | 1437684..1438153 (-) | 470 | Protein_1416 | phosphatidylglycerophosphatase A | - |
| CRH16_RS07465 | thiL | 1438156..1439124 (-) | 969 | WP_112063047.1 | thiamine-phosphate kinase | - |
| CRH16_RS07470 | nusB | 1439133..1439546 (-) | 414 | WP_010785952.1 | transcription antitermination factor NusB | - |
| CRH16_RS07475 | comE | 1439625..1440887 (-) | 1263 | WP_010785953.1 | type IV pilus secretin PilQ | Machinery gene |
| CRH16_RS07480 | comD | 1440897..1441283 (-) | 387 | WP_112063048.1 | hypothetical protein | Machinery gene |
| CRH16_RS07485 | comC | 1441283..1441813 (-) | 531 | WP_112063049.1 | ATPase | Machinery gene |
| CRH16_RS07490 | comB | 1441810..1442331 (-) | 522 | WP_005712507.1 | hypothetical protein | Machinery gene |
| CRH16_RS07495 | comA | 1442307..1442984 (-) | 678 | WP_112063050.1 | competence protein ComA | Machinery gene |
| CRH16_RS07500 | - | 1443138..1445692 (+) | 2555 | Protein_1424 | penicillin-binding protein 1A | - |
| CRH16_RS07505 | aroK | 1445922..1446443 (+) | 522 | WP_005712514.1 | shikimate kinase AroK | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 20851.33 Da Isoelectric Point: 9.8029
>NTDB_id=253414 CRH16_RS07485 WP_112063049.1 1441283..1441813(-) (comC) [Glaesserella parasuis strain SH0104]
MKLSLAKYYLMPEHPLYRGLYYLNQNKGFILSGIFLLIVAFPVGNYFYLNQKIDQQQKQLTEVKQIIEHKQQQLKLLQQR
YQLAQDKSELLTKINQQIQLILDKNSVEIDSIQWNMEERKIYLLISQSTQKIFNVIAELNQLTTVKFQEIHLTKKTKQKY
IQLNATLLFQADTGEP
MKLSLAKYYLMPEHPLYRGLYYLNQNKGFILSGIFLLIVAFPVGNYFYLNQKIDQQQKQLTEVKQIIEHKQQQLKLLQQR
YQLAQDKSELLTKINQQIQLILDKNSVEIDSIQWNMEERKIYLLISQSTQKIFNVIAELNQLTTVKFQEIHLTKKTKQKY
IQLNATLLFQADTGEP
Nucleotide
Download Length: 531 bp
>NTDB_id=253414 CRH16_RS07485 WP_112063049.1 1441283..1441813(-) (comC) [Glaesserella parasuis strain SH0104]
ATGAAATTGTCCTTAGCCAAGTATTATTTAATGCCAGAACATCCATTATATCGTGGCTTATATTATTTAAACCAAAATAA
AGGATTTATTCTATCGGGAATATTTTTATTGATTGTGGCATTTCCAGTAGGAAATTATTTTTATCTTAATCAGAAAATAG
ATCAACAACAAAAACAGCTCACTGAAGTTAAACAGATTATTGAGCATAAACAGCAACAATTAAAATTATTACAACAACGC
TATCAACTTGCTCAAGATAAAAGTGAATTATTAACCAAAATAAATCAACAAATTCAGCTGATTTTAGATAAAAATAGCGT
AGAAATTGACAGTATTCAATGGAATATGGAAGAAAGAAAAATCTATTTATTAATTAGCCAATCTACACAAAAGATATTTA
ATGTAATTGCTGAGCTTAATCAATTAACAACAGTTAAATTTCAGGAAATTCATTTAACTAAAAAAACAAAACAGAAATAT
ATTCAACTCAATGCCACTTTACTTTTTCAAGCTGACACAGGAGAACCGTAA
ATGAAATTGTCCTTAGCCAAGTATTATTTAATGCCAGAACATCCATTATATCGTGGCTTATATTATTTAAACCAAAATAA
AGGATTTATTCTATCGGGAATATTTTTATTGATTGTGGCATTTCCAGTAGGAAATTATTTTTATCTTAATCAGAAAATAG
ATCAACAACAAAAACAGCTCACTGAAGTTAAACAGATTATTGAGCATAAACAGCAACAATTAAAATTATTACAACAACGC
TATCAACTTGCTCAAGATAAAAGTGAATTATTAACCAAAATAAATCAACAAATTCAGCTGATTTTAGATAAAAATAGCGT
AGAAATTGACAGTATTCAATGGAATATGGAAGAAAGAAAAATCTATTTATTAATTAGCCAATCTACACAAAAGATATTTA
ATGTAATTGCTGAGCTTAATCAATTAACAACAGTTAAATTTCAGGAAATTCATTTAACTAAAAAAACAAAACAGAAATAT
ATTCAACTCAATGCCACTTTACTTTTTCAAGCTGACACAGGAGAACCGTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comC | Glaesserella parasuis strain SC1401 |
91.477 |
100 |
0.915 |