Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   CRH16_RS07480 Genome accession   NZ_CP024412
Coordinates   1440897..1441283 (-) Length   128 a.a.
NCBI ID   WP_112063048.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SH0104     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1435897..1446283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH16_RS07450 trxA 1436442..1436756 (-) 315 WP_005712493.1 thioredoxin -
  CRH16_RS07455 - 1437053..1437682 (-) 630 WP_005712495.1 LysE family transporter -
  CRH16_RS07460 - 1437684..1438153 (-) 470 Protein_1416 phosphatidylglycerophosphatase A -
  CRH16_RS07465 thiL 1438156..1439124 (-) 969 WP_112063047.1 thiamine-phosphate kinase -
  CRH16_RS07470 nusB 1439133..1439546 (-) 414 WP_010785952.1 transcription antitermination factor NusB -
  CRH16_RS07475 comE 1439625..1440887 (-) 1263 WP_010785953.1 type IV pilus secretin PilQ Machinery gene
  CRH16_RS07480 comD 1440897..1441283 (-) 387 WP_112063048.1 hypothetical protein Machinery gene
  CRH16_RS07485 comC 1441283..1441813 (-) 531 WP_112063049.1 ATPase Machinery gene
  CRH16_RS07490 comB 1441810..1442331 (-) 522 WP_005712507.1 hypothetical protein Machinery gene
  CRH16_RS07495 comA 1442307..1442984 (-) 678 WP_112063050.1 competence protein ComA Machinery gene
  CRH16_RS07500 - 1443138..1445692 (+) 2555 Protein_1424 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 15013.16 Da        Isoelectric Point: 5.6397

>NTDB_id=253413 CRH16_RS07480 WP_112063048.1 1440897..1441283(-) (comD) [Glaesserella parasuis strain SH0104]
MRLCFFYFVFLSAVTMADPFYAKENAQDQPHTAKDQNKTTACTPTEKVNEIHLTTDFDKLQLIGIIQIDDKIRAIFIDDK
KQLIDLYPNDYLSHSFIQIKEIDFKSVSYIDWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 387 bp        

>NTDB_id=253413 CRH16_RS07480 WP_112063048.1 1440897..1441283(-) (comD) [Glaesserella parasuis strain SH0104]
ATGCGATTATGCTTTTTCTATTTTGTCTTTCTAAGTGCTGTTACTATGGCAGATCCTTTTTATGCCAAGGAAAATGCCCA
AGATCAGCCACACACGGCAAAAGATCAAAACAAAACGACCGCTTGTACGCCAACAGAGAAGGTGAACGAAATTCACCTCA
CCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCGACGATAAAATTCGAGCGATTTTTATAGATGATAAA
AAACAGCTTATAGATTTATATCCTAACGACTATTTAAGCCATTCCTTTATTCAAATTAAAGAGATTGATTTTAAATCGGT
TAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCCCCTAAATTGTTTACTTCAAAATTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

92.035

88.281

0.812

Multiple sequence alignment