Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   CRH16_RS03040 Genome accession   NZ_CP024412
Coordinates   577631..577972 (+) Length   113 a.a.
NCBI ID   WP_010786294.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SH0104     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 572631..582972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH16_RS03020 - 573906..574493 (-) 588 WP_010786297.1 FMN-dependent NADH-azoreductase -
  CRH16_RS03025 waaF 574589..575641 (-) 1053 WP_112062845.1 lipopolysaccharide heptosyltransferase II -
  CRH16_RS03030 - 575650..575916 (-) 267 WP_234799243.1 MliC family protein -
  CRH16_RS03035 - 576108..577373 (-) 1266 WP_112062846.1 LysM-like peptidoglycan-binding domain-containing protein -
  CRH16_RS03040 comEA/comE1 577631..577972 (+) 342 WP_010786294.1 ComEA family DNA-binding protein Machinery gene
  CRH16_RS03045 - 578072..578520 (-) 449 Protein_579 IS5 family transposase -
  CRH16_RS03050 - 578657..579754 (+) 1098 WP_112062847.1 ISAs1 family transposase -
  CRH16_RS03055 cmoB 579877..580839 (+) 963 WP_075592690.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12407.27 Da        Isoelectric Point: 9.8972

>NTDB_id=253406 CRH16_RS03040 WP_010786294.1 577631..577972(+) (comEA/comE1) [Glaesserella parasuis strain SH0104]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=253406 CRH16_RS03040 WP_010786294.1 577631..577972(+) (comEA/comE1) [Glaesserella parasuis strain SH0104]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

98.23

100

0.982
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602

Multiple sequence alignment