Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   DJ572_RS12805 Genome accession   NZ_CP029461
Coordinates   2466328..2467455 (-) Length   375 a.a.
NCBI ID   WP_038429342.1    Uniprot ID   -
Organism   Bacillus subtilis strain QB61     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2461328..2472455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS12780 (DJ572_12735) rapC 2461438..2462565 (+) 1128 WP_119899591.1 response regulator aspartate phosphatase RapE Regulator
  DJ572_RS12785 (DJ572_12740) phrE 2462555..2462689 (+) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  DJ572_RS12790 (DJ572_12745) - 2463323..2464045 (-) 723 WP_119899593.1 NAD(P)-binding domain-containing protein -
  DJ572_RS12795 (DJ572_12750) - 2464271..2464630 (+) 360 WP_049635841.1 winged helix-turn-helix transcriptional regulator -
  DJ572_RS12800 (DJ572_12755) nfsA 2465110..2465850 (+) 741 WP_119899595.1 oxygen-insensitive NADPH nitroreductase -
  DJ572_RS12805 (DJ572_12760) rapC 2466328..2467455 (-) 1128 WP_038429342.1 Rap family tetratricopeptide repeat protein Regulator
  DJ572_RS12810 (DJ572_12765) - 2467641..2469521 (+) 1881 WP_119899597.1 T7SS effector LXG polymorphic toxin -
  DJ572_RS12815 (DJ572_12770) - 2469526..2469825 (+) 300 WP_119899599.1 contact-dependent growth inhibition system immunity protein -
  DJ572_RS12820 (DJ572_12775) cwlA 2469864..2470682 (-) 819 WP_119899600.1 N-acetylmuramoyl-L-alanine amidase -
  DJ572_RS12825 (DJ572_12780) - 2470727..2470867 (-) 141 Protein_2490 phage holin family protein -
  DJ572_RS12830 (DJ572_12785) - 2470894..2471079 (-) 186 Protein_2491 phage terminase large subunit -
  DJ572_RS12835 (DJ572_12790) terS 2471076..2471763 (-) 688 Protein_2492 phage terminase small subunit -
  DJ572_RS21715 - 2471777..2471845 (-) 69 WP_250540529.1 phage terminase small subunit-related protein -
  DJ572_RS12840 (DJ572_12795) - 2472027..2472113 (+) 87 WP_073991391.1 YjcZ family sporulation protein -
  DJ572_RS12845 (DJ572_12800) - 2472154..2472246 (+) 93 WP_080019512.1 YjcZ family sporulation protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44163.39 Da        Isoelectric Point: 6.0289

>NTDB_id=253397 DJ572_RS12805 WP_038429342.1 2466328..2467455(-) (rapC) [Bacillus subtilis strain QB61]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQQGVNQTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=253397 DJ572_RS12805 WP_038429342.1 2466328..2467455(-) (rapC) [Bacillus subtilis strain QB61]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAAAGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATCAAACAATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(195-251)

Tetratricopeptide repeat (TPR_8)

(259-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

100

0.445
  rapF Bacillus subtilis subsp. subtilis str. 168

39.683

100

0.4

Multiple sequence alignment