Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DF184_RS10755 Genome accession   NZ_CP029398
Coordinates   2181761..2182855 (+) Length   364 a.a.
NCBI ID   WP_109372119.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2176761..2187855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS10730 (DF184_10730) pgsA 2177280..2177819 (-) 540 WP_044683082.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DF184_RS10735 (DF184_10735) rodZ 2177829..2178686 (-) 858 WP_109372115.1 cytoskeleton protein RodZ -
  DF184_RS10740 (DF184_10740) - 2178768..2180051 (-) 1284 WP_024387841.1 pitrilysin family protein -
  DF184_RS10745 (DF184_10745) - 2180048..2181301 (-) 1254 WP_109372117.1 pitrilysin family protein -
  DF184_RS10750 (DF184_10750) yaaA 2181375..2181758 (+) 384 WP_002936175.1 S4 domain-containing protein YaaA -
  DF184_RS10755 (DF184_10755) recF 2181761..2182855 (+) 1095 WP_109372119.1 DNA replication/repair protein RecF Machinery gene
  DF184_RS10760 (DF184_10760) guaB 2182927..2184408 (-) 1482 WP_015647590.1 IMP dehydrogenase -
  DF184_RS10765 (DF184_10765) trpS 2184640..2185665 (-) 1026 WP_109372121.1 tryptophan--tRNA ligase -
  DF184_RS10770 (DF184_10770) - 2186020..2186892 (+) 873 WP_013730698.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42175.30 Da        Isoelectric Point: 6.9139

>NTDB_id=253214 DF184_RS10755 WP_109372119.1 2181761..2182855(+) (recF) [Streptococcus suis strain HN105]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNIKVQEISGNREELTIEYKTSIELTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=253214 DF184_RS10755 WP_109372119.1 2181761..2182855(+) (recF) [Streptococcus suis strain HN105]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTGCTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAACCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAAATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATATAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACAAAACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGGCCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAATCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

69.806

99.176

0.692
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442