Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   A4V61_RS06315 Genome accession   NZ_CP024260
Coordinates   1169501..1170130 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain F5656C1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1164501..1175130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4V61_RS06300 helD 1164743..1166797 (-) 2055 WP_001295354.1 DNA helicase IV -
  A4V61_RS06305 yccF 1166920..1167366 (+) 447 WP_001261235.1 YccF domain-containing protein -
  A4V61_RS06310 yccS 1167376..1169538 (+) 2163 WP_072145235.1 YccS family putative transporter -
  A4V61_RS06315 sxy/tfoX 1169501..1170130 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  A4V61_RS06320 sulA 1170349..1170858 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  A4V61_RS06330 ompA 1171215..1172255 (+) 1041 WP_000750416.1 porin OmpA -
  A4V61_RS06335 matP 1172331..1172783 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  A4V61_RS06340 ycbZ 1172969..1174729 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=253187 A4V61_RS06315 WP_000839153.1 1169501..1170130(-) (sxy/tfoX) [Escherichia coli strain F5656C1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=253187 A4V61_RS06315 WP_000839153.1 1169501..1170130(-) (sxy/tfoX) [Escherichia coli strain F5656C1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment