Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DF184_RS07215 Genome accession   NZ_CP029398
Coordinates   1442349..1442945 (-) Length   198 a.a.
NCBI ID   WP_014637682.1    Uniprot ID   A0AA96ZYK5
Organism   Streptococcus suis strain HN105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1437349..1447945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS07190 (DF184_07190) murF 1437558..1438919 (-) 1362 WP_109371701.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DF184_RS07195 (DF184_07195) - 1438974..1439642 (-) 669 WP_044691987.1 ABC transporter ATP-binding protein -
  DF184_RS07200 (DF184_07200) - 1439652..1440728 (-) 1077 WP_044761692.1 ABC transporter permease -
  DF184_RS07205 (DF184_07205) - 1440730..1441110 (-) 381 WP_024401154.1 OsmC family protein -
  DF184_RS07210 (DF184_07210) - 1441198..1442244 (-) 1047 WP_109371703.1 D-alanine--D-alanine ligase -
  DF184_RS07215 (DF184_07215) recR 1442349..1442945 (-) 597 WP_014637682.1 recombination mediator RecR Machinery gene
  DF184_RS07220 (DF184_07220) pbp2b 1442954..1445023 (-) 2070 WP_109371705.1 penicillin-binding protein PBP2B -
  DF184_RS07225 (DF184_07225) vga(F) 1445115..1446500 (-) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  DF184_RS07230 (DF184_07230) vicX 1446758..1447561 (-) 804 WP_024399908.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21707.83 Da        Isoelectric Point: 4.4829

>NTDB_id=253185 DF184_RS07215 WP_014637682.1 1442349..1442945(-) (recR) [Streptococcus suis strain HN105]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLTYCSICGNLTDQDPCGICQDTSRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMENEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=253185 DF184_RS07215 WP_014637682.1 1442349..1442945(-) (recR) [Streptococcus suis strain HN105]
ATGCTATATCCTACACCCATTGCCAAGTTGATTGACAGTTACTCCAAATTACCAGGAATCGGTATTAAGACAGCTACGCG
GCTGGCCTTCTATACCATTGGTATGGAAGATGATGTAGTCAACGAATTTGCTAAAAATCTCCTGGCGGCTAAGAGAGATT
TGACCTATTGTTCCATTTGCGGCAATTTGACAGACCAGGACCCTTGCGGTATTTGTCAAGATACCAGCCGTGACCAGTCG
ACCATTTTAATTGTAGAAGACAGTCGAGATGTGACAGCCTTGGAAAATATCCAAGAATACCACGGTCTTTACCATGTCTT
GCATGGCTTGATTTCCCCGATGAATGGCATTGGACCAGACGATATTAACTTAAAGACATTGCTAACTCGTCTGATGGAAA
ACGAAGTGACAGAAGTCATTGTAGCGACAAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA96ZYK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495