Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CYA_RS01580 Genome accession   NC_007775
Coordinates   353548..354966 (-) Length   472 a.a.
NCBI ID   WP_011429244.1    Uniprot ID   A0A2G8PDY5
Organism   Synechococcus sp. JA-3-3Ab     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 348548..359966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYA_RS01565 (CYA_0332) groL 349032..350660 (+) 1629 WP_011429241.1 chaperonin GroEL -
  CYA_RS01570 (CYA_0333) lysS 350698..352224 (-) 1527 WP_011429242.1 lysine--tRNA ligase -
  CYA_RS01575 (CYA_0334) - 352271..353059 (-) 789 WP_099834681.1 Uma2 family endonuclease -
  CYA_RS01580 (CYA_0335) radA 353548..354966 (-) 1419 WP_011429244.1 DNA repair protein RadA Machinery gene
  CYA_RS01585 (CYA_0336) aroC 355019..356155 (-) 1137 WP_011429245.1 chorismate synthase -
  CYA_RS01590 (CYA_0337) - 356210..356944 (-) 735 WP_011429246.1 pantothenate kinase -
  CYA_RS01595 (CYA_0338) - 356934..357641 (-) 708 WP_228375405.1 AMMECR1 domain-containing protein -
  CYA_RS01600 (CYA_0339) trpB 357668..358921 (-) 1254 WP_041438793.1 tryptophan synthase subunit beta -
  CYA_RS01605 (CYA_0340) - 359124..359483 (+) 360 WP_011429249.1 hypothetical protein -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 50035.60 Da        Isoelectric Point: 8.2387

>NTDB_id=25313 CYA_RS01580 WP_011429244.1 353548..354966(-) (radA) [Synechococcus sp. JA-3-3Ab]
MAKAKTVWECSQCGERYPKFLGRCDNCGAWNTLTEVVVAPSSKSGPPQRLVPQRSRGNGMPLSALPLSQVSSESHPRLSS
GSGEFDRVLGGGIVPGSLVLIGGDPGIGKSTLLLQTAAHLAKRGPILYVSGEESAQQIKLRAARISGTESLRLGIESEQL
YLLAETDLEAIVAEIQALQPQVAIIDSIQAIFWGQLSSAPGSVSQVRECAGLLMRVAKKLGVALLIVGHVTKDGSLAGPK
VLEHLVDTVLYFEGDRFQSHRLLRAVKNRFGAAQEIGVFEMTASGLVEVDNPSQLFLSSRDQATPGTATIVACEGTRPLV
VDVQALVSPTSYSSPRRTATGIELNRFLQILAVLEKRVGIPLSKYDAYIASAGGIQVAEPAADLGVAVAVAASFRDRQVD
PFTVLIGEVGLGGQVRPVAQLEQRLKEAAKLGFRHAIIPNSPVLADSGLRLSRVQRVLEALLVALPSSEPGQ

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=25313 CYA_RS01580 WP_011429244.1 353548..354966(-) (radA) [Synechococcus sp. JA-3-3Ab]
ATGGCCAAGGCCAAAACCGTCTGGGAGTGCAGCCAGTGCGGCGAGCGCTACCCCAAGTTTTTGGGCCGCTGCGACAACTG
TGGCGCCTGGAACACGCTGACGGAGGTGGTCGTCGCCCCCTCTTCTAAGTCTGGGCCACCGCAGCGGCTCGTTCCCCAGC
GCAGCCGCGGCAACGGGATGCCCCTGTCGGCCCTTCCCCTCTCCCAAGTCTCCTCGGAGAGCCACCCCCGCCTCTCCTCT
GGCTCCGGCGAGTTCGACCGGGTGTTGGGAGGTGGCATCGTGCCGGGATCCCTGGTGTTGATCGGCGGCGATCCAGGCAT
TGGCAAGAGCACCCTGCTGCTGCAGACTGCTGCGCATCTCGCCAAGCGGGGGCCCATCTTGTACGTGTCGGGGGAGGAAT
CGGCCCAGCAGATCAAGCTGCGCGCCGCTCGCATTAGCGGGACGGAGTCCTTGCGGCTGGGGATAGAAAGCGAGCAGCTC
TACCTATTGGCGGAAACCGACCTGGAGGCCATTGTGGCCGAGATCCAGGCCCTACAGCCCCAGGTGGCGATCATCGACAG
CATCCAGGCTATCTTCTGGGGGCAGCTCAGCTCGGCGCCGGGATCCGTTTCCCAGGTGCGGGAATGCGCCGGCCTCTTGA
TGCGAGTGGCCAAAAAACTGGGGGTGGCCCTGCTCATCGTTGGCCATGTTACCAAAGATGGATCCCTGGCCGGGCCCAAG
GTGCTGGAGCACCTGGTGGACACCGTCTTGTACTTTGAGGGGGATCGCTTTCAGAGCCACCGCCTGCTGCGCGCCGTCAA
AAACCGCTTTGGGGCGGCCCAGGAAATCGGCGTTTTCGAGATGACCGCCTCTGGCTTGGTGGAGGTGGACAATCCCTCGC
AGCTTTTTTTGAGCAGCCGGGATCAGGCCACGCCGGGAACGGCCACCATCGTCGCCTGTGAGGGCACCCGCCCCTTGGTG
GTGGACGTGCAGGCCCTGGTCAGCCCCACCAGCTACAGCTCCCCCCGCCGCACCGCCACCGGCATCGAGCTCAACCGCTT
TTTGCAGATCTTGGCGGTGCTGGAAAAACGGGTGGGGATCCCGCTTTCCAAATACGACGCCTACATTGCCTCCGCCGGCG
GCATCCAGGTGGCCGAGCCAGCTGCCGACTTGGGGGTGGCGGTGGCCGTGGCCGCCAGCTTCCGAGATCGCCAGGTGGAT
CCCTTTACGGTCTTGATCGGCGAGGTGGGCCTGGGGGGACAGGTGCGCCCGGTGGCGCAGTTGGAGCAGCGCCTCAAGGA
AGCCGCCAAGCTGGGGTTCCGCCACGCCATCATCCCCAACAGCCCCGTTTTGGCCGACTCTGGCCTGCGCTTGAGCCGGG
TGCAGCGGGTGTTGGAAGCTCTGCTGGTGGCTCTGCCCAGCTCCGAGCCTGGCCAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(380-440)

AAA domain (AAA_25)

(89-234)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8PDY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.469

99.788

0.494
  radA Streptococcus pneumoniae Rx1

51.247

93.432

0.479
  radA Streptococcus pneumoniae D39

51.247

93.432

0.479
  radA Streptococcus pneumoniae R6

51.247

93.432

0.479
  radA Streptococcus pneumoniae TIGR4

51.247

93.432

0.479
  radA Streptococcus mitis SK321

51.247

93.432

0.479
  radA Streptococcus mitis NCTC 12261

51.02

93.432

0.477

Multiple sequence alignment