Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   CS376_RS16445 Genome accession   NZ_CP024203
Coordinates   3260282..3261166 (-) Length   294 a.a.
NCBI ID   WP_032865221.1    Uniprot ID   -
Organism   Bacillus velezensis strain NKG-1     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3255282..3266166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS376_RS16410 - 3255489..3255965 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  CS376_RS16415 - 3255965..3256249 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  CS376_RS16420 mnhG 3256233..3256607 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  CS376_RS16425 - 3256647..3257030 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  CS376_RS16430 comA 3257052..3257696 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  CS376_RS16435 comP 3257777..3260086 (-) 2310 WP_099567053.1 histidine kinase Regulator
  CS376_RS16440 - 3260106..3260282 (-) 177 WP_007408675.1 competence pheromone ComX -
  CS376_RS16445 comQ 3260282..3261166 (-) 885 WP_032865221.1 class 1 isoprenoid biosynthesis enzyme Regulator
  CS376_RS16450 degQ 3261351..3261491 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  CS376_RS16460 - 3261956..3262297 (+) 342 WP_099567054.1 hypothetical protein -
  CS376_RS16465 - 3262304..3263527 (-) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  CS376_RS16470 - 3263657..3265123 (-) 1467 WP_020954301.1 nicotinate phosphoribosyltransferase -
  CS376_RS16475 - 3265141..3265692 (-) 552 WP_003152033.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33789.75 Da        Isoelectric Point: 6.1701

>NTDB_id=252926 CS376_RS16445 WP_032865221.1 3260282..3261166(-) (comQ) [Bacillus velezensis strain NKG-1]
MKSIIEQNIFNQHLLQLLLGFVESRKYLTFAESALLHYEVFGGRDFKTAEKLAAGIEILTLSADIIDDLEDEDNKQALWM
KIDRSEALSAAFSLYTAGLQGINSINMNPFILSYILKYTQDAMQGQHDDIINKPEKEDESLEVIRLKCGSLFALSNVAGT
MLATGKYNETVETYSYYKGMFEQIYSDYLALFSSKRSDILKDKHTLINLYLKRLFNEPSEKLVRMFSHRETHLKFISDKN
NFIQTLTDAGVTQYVSVLHQLYKQKCENAIEKLNLETSKIDKLKKYVVNRGIEV

Nucleotide


Download         Length: 885 bp        

>NTDB_id=252926 CS376_RS16445 WP_032865221.1 3260282..3261166(-) (comQ) [Bacillus velezensis strain NKG-1]
ATGAAGAGTATAATAGAGCAAAACATATTCAATCAACATTTACTACAGCTTCTTCTTGGGTTTGTTGAATCCAGAAAATA
TTTAACCTTTGCTGAATCTGCTTTATTGCATTATGAAGTTTTTGGCGGAAGGGATTTTAAGACTGCTGAGAAACTTGCGG
CGGGAATTGAAATTCTTACGCTTTCCGCCGATATTATTGATGATCTTGAAGATGAAGATAACAAACAAGCTCTTTGGATG
AAGATAGACCGTTCAGAAGCTTTAAGCGCAGCTTTTTCATTATACACAGCAGGGCTGCAGGGGATTAATTCAATTAACAT
GAATCCTTTTATTCTTTCTTACATACTGAAATATACACAAGACGCTATGCAAGGACAACACGATGATATAATCAATAAGC
CAGAGAAAGAAGATGAAAGTTTAGAGGTCATTAGATTAAAATGCGGGAGTCTATTCGCTCTATCCAATGTGGCAGGTACT
ATGTTAGCAACTGGAAAGTATAATGAAACTGTTGAAACGTATTCCTATTACAAAGGAATGTTTGAACAGATATATAGTGA
TTATCTGGCTCTTTTCAGCTCTAAACGCAGTGATATTTTAAAAGATAAACACACGTTAATCAACTTGTACCTTAAGAGGC
TGTTTAACGAGCCTTCTGAAAAATTGGTTCGTATGTTTTCTCATAGAGAAACACACCTTAAGTTTATATCTGATAAAAAC
AATTTTATTCAGACATTAACTGATGCAGGTGTTACTCAGTATGTTTCAGTTTTACACCAATTGTATAAGCAAAAATGTGA
AAATGCTATAGAGAAACTAAATCTTGAAACCAGTAAAATAGATAAATTGAAAAAATATGTAGTTAATAGGGGGATTGAAG
TATAA

Domains

Predicted by InterproScan.

Polyprenyl synthetase (polyprenyl_synt)

(35-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

62.456

96.939

0.605

Multiple sequence alignment