Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CS376_RS16430 Genome accession   NZ_CP024203
Coordinates   3257052..3257696 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain NKG-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3252052..3262696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS376_RS16395 - 3253237..3253668 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  CS376_RS16400 - 3253668..3254009 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  CS376_RS16405 - 3254002..3255483 (+) 1482 WP_099567052.1 Na+/H+ antiporter subunit D -
  CS376_RS16410 - 3255489..3255965 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  CS376_RS16415 - 3255965..3256249 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  CS376_RS16420 mnhG 3256233..3256607 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  CS376_RS16425 - 3256647..3257030 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  CS376_RS16430 comA 3257052..3257696 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  CS376_RS16435 comP 3257777..3260086 (-) 2310 WP_099567053.1 histidine kinase Regulator
  CS376_RS16440 - 3260106..3260282 (-) 177 WP_007408675.1 competence pheromone ComX -
  CS376_RS16445 comQ 3260282..3261166 (-) 885 WP_032865221.1 class 1 isoprenoid biosynthesis enzyme Regulator
  CS376_RS16450 degQ 3261351..3261491 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  CS376_RS16460 - 3261956..3262297 (+) 342 WP_099567054.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=252924 CS376_RS16430 WP_003152052.1 3257052..3257696(-) (comA) [Bacillus velezensis strain NKG-1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=252924 CS376_RS16430 WP_003152052.1 3257052..3257696(-) (comA) [Bacillus velezensis strain NKG-1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment