Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   Y75_RS13600 Genome accession   NC_007779
Coordinates   2734802..2735539 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli str. K-12 substr. W3110     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2729802..2740539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y75_RS13585 (Y75_p2541) clpC 2730256..2732829 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  Y75_RS13590 (Y75_p2542) yfiH 2732959..2733690 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  Y75_RS13595 (Y75_p2543) rluD 2733687..2734667 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  Y75_RS13600 (Y75_p2544) comL 2734802..2735539 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  Y75_RS13610 (Y75_p2545) raiA 2735810..2736151 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  Y75_RS24980 pheL 2736255..2736302 (+) 48 WP_010723158.1 phe operon leader peptide -
  Y75_RS13615 (Y75_p2547) pheA 2736401..2737561 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  Y75_RS13620 (Y75_p2548) tyrA 2737604..2738725 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  Y75_RS13625 (Y75_p2549) aroF 2738736..2739806 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  Y75_RS13630 (Y75_p2550) yfiL 2740016..2740381 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=25289 Y75_RS13600 WP_000197686.1 2734802..2735539(+) (comL) [Escherichia coli str. K-12 substr. W3110]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=25289 Y75_RS13600 WP_000197686.1 2734802..2735539(+) (comL) [Escherichia coli str. K-12 substr. W3110]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment