Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   CS376_RS01875 Genome accession   NZ_CP024203
Coordinates   348468..348905 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain NKG-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 343468..353905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS376_RS01850 - 344486..345622 (+) 1137 WP_099566385.1 zinc-dependent alcohol dehydrogenase -
  CS376_RS01855 - 345637..346071 (+) 435 WP_007409358.1 RDD family protein -
  CS376_RS01860 - 346189..346467 (+) 279 WP_372691166.1 YckD family protein -
  CS376_RS01865 - 346571..348007 (+) 1437 WP_099566386.1 glycoside hydrolase family 1 protein -
  CS376_RS01870 nin/comJ 348048..348446 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  CS376_RS01875 nucA/comI 348468..348905 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CS376_RS01880 hxlB 349262..349819 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  CS376_RS01885 hxlA 349816..350451 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  CS376_RS01890 - 350683..351045 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=252877 CS376_RS01875 WP_003156588.1 348468..348905(-) (nucA/comI) [Bacillus velezensis strain NKG-1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=252877 CS376_RS01875 WP_003156588.1 348468..348905(-) (nucA/comI) [Bacillus velezensis strain NKG-1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment