Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   CS376_RS01870 Genome accession   NZ_CP024203
Coordinates   348048..348446 (-) Length   132 a.a.
NCBI ID   WP_039252825.1    Uniprot ID   -
Organism   Bacillus velezensis strain NKG-1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 343048..353446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS376_RS01845 - 343219..344421 (+) 1203 WP_099566384.1 GTP-binding protein -
  CS376_RS01850 - 344486..345622 (+) 1137 WP_099566385.1 zinc-dependent alcohol dehydrogenase -
  CS376_RS01855 - 345637..346071 (+) 435 WP_007409358.1 RDD family protein -
  CS376_RS01860 - 346189..346467 (+) 279 WP_372691166.1 YckD family protein -
  CS376_RS01865 - 346571..348007 (+) 1437 WP_099566386.1 glycoside hydrolase family 1 protein -
  CS376_RS01870 nin/comJ 348048..348446 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  CS376_RS01875 nucA/comI 348468..348905 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CS376_RS01880 hxlB 349262..349819 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  CS376_RS01885 hxlA 349816..350451 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  CS376_RS01890 - 350683..351045 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14993.97 Da        Isoelectric Point: 4.9712

>NTDB_id=252876 CS376_RS01870 WP_039252825.1 348048..348446(-) (nin/comJ) [Bacillus velezensis strain NKG-1]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=252876 CS376_RS01870 WP_039252825.1 348048..348446(-) (nin/comJ) [Bacillus velezensis strain NKG-1]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment