Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   B9S64_RS14195 Genome accession   NZ_CP029342
Coordinates   3199504..3200916 (+) Length   470 a.a.
NCBI ID   WP_103488682.1    Uniprot ID   -
Organism   Streptomyces sp. SM18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3194504..3205916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S64_RS14180 (B9S64_14180) - 3195554..3196501 (-) 948 WP_103490516.1 Ppx/GppA phosphatase family protein -
  B9S64_RS14185 (B9S64_14185) - 3196543..3197382 (+) 840 WP_103490515.1 hypothetical protein -
  B9S64_RS14190 (B9S64_14190) - 3197473..3199368 (-) 1896 WP_109492053.1 hypothetical protein -
  B9S64_RS14195 (B9S64_14195) radA/sms 3199504..3200916 (+) 1413 WP_103488682.1 DNA repair protein RadA Machinery gene
  B9S64_RS14200 (B9S64_14200) disA 3200997..3202121 (+) 1125 WP_028442179.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  B9S64_RS14205 (B9S64_14205) - 3202314..3203147 (-) 834 WP_258037675.1 hypothetical protein -
  B9S64_RS14210 (B9S64_14210) - 3203409..3204311 (+) 903 WP_093530867.1 A/G-specific adenine glycosylase -
  B9S64_RS14215 (B9S64_14215) - 3204511..3205122 (+) 612 WP_103488681.1 SigE family RNA polymerase sigma factor -
  B9S64_RS14220 (B9S64_14220) - 3205110..3205838 (+) 729 WP_103488680.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49572.67 Da        Isoelectric Point: 8.4964

>NTDB_id=252846 B9S64_RS14195 WP_103488682.1 3199504..3200916(+) (radA/sms) [Streptomyces sp. SM18]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEDHRTLYVTAEESASQVRLRADRIRAIDDHLYLAAETDLSAV
LGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKEGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAIALALASAAGDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFRHALVPRDPGRVPSGMKVTEVADMGDALRALPRRSRPDGPREDGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=252846 B9S64_RS14195 WP_103488682.1 3199504..3200916(+) (radA/sms) [Streptomyces sp. SM18]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGACCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGCCGCTGCCCGGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTTCGGCGGTGCCCCCGCCGTCCGGACCACCGCCGCGG
GCCGGGTCTCCACCGCGGCCCTGCCGATCGGCCAGGTGGACAGCCGGCAGGCCACGGCGCGCTCGACCGGCGTCGGGGAG
CTGGACCGGGTGCTCGGCGGAGGGCTGGTGCCCGGCGCCGTCGTGCTGCTCGCGGGCGAGCCGGGGGTGGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGAGGACCACCGCACGCTGTACGTCACGGCGGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGGGCCGACCGCATCCGGGCCATCGACGACCATCTGTACCTGGCCGCGGAGACGGACCTGTCCGCGGTG
CTGGGGCACCTGGACGCGGTCAAGCCCTCCCTGCTGGTCCTGGACTCCGTGCAGACGGTCGCCTCGCCGGAGATCGACGG
CGCCCCGGGCGGCATGGCGCAGGTCCGGGAGGTGGCGGGCGCCCTCATCCGGGCCTCGAAGGAGCGCGGCATGTCCACGC
TCCTGGTCGGCCACGTCACCAAGGAGGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGGCACGCGCGCCTCCGGCTCGTCCGGGGCGTCAAGAACCGCTACGGCGCGACGGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGTCTCGCCGACCCCTCGGGCCTCTTCCTGACCCGCCGCGACGAGCCGGTGC
CGGGCACCTGTCTGACGGTCACCCTGGAGGGCAAGCGCCCCCTCGTCGCGGAGGTGCAGGCGCTGACGGTCGACTCGCAG
ATCCCCTCGCCCCGGCGCACGACCTCCGGGCTGGAGACGTCCCGGGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGGGG
CCGGATCAGCGCGCTCGGAAAGCGGGACATCTACAGCGCGACGGTGGGCGGTGTGAAGCTCACCGAACCCGCGGCGGACC
TGGCGATCGCGCTGGCGCTGGCCAGCGCGGCCGGCGACACACCGCTCCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGG
CTGGCGGGCGAGGTCAGAAGGGTCACCGGGGTGCAGCGCAGACTGGCCGAGGCGCACCGCCTGGGGTTCCGGCACGCCCT
GGTCCCCCGGGACCCCGGACGGGTCCCGTCCGGTATGAAGGTCACAGAAGTCGCCGACATGGGTGACGCCCTGCGCGCCC
TTCCCCGCCGCTCTCGCCCGGACGGACCACGGGAGGACGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

42.418

96.809

0.411
  radA Streptococcus pneumoniae D39

42.418

96.809

0.411
  radA Streptococcus pneumoniae R6

42.418

96.809

0.411
  radA Streptococcus pneumoniae TIGR4

42.418

96.809

0.411
  radA Streptococcus mitis SK321

44.056

91.277

0.402
  radA Streptococcus mitis NCTC 12261

44.056

91.277

0.402

Multiple sequence alignment