Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DG474_RS09500 Genome accession   NZ_CP029257
Coordinates   1984798..1985895 (+) Length   365 a.a.
NCBI ID   WP_255778216.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1979798..1990895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS09475 (DG474_09625) pgsA 1980323..1980868 (-) 546 WP_000712149.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DG474_RS09480 (DG474_09630) rodZ 1980879..1981700 (-) 822 WP_255778213.1 cytoskeleton protein RodZ -
  DG474_RS09485 (DG474_09635) - 1981736..1983019 (-) 1284 WP_255778214.1 pitrilysin family protein -
  DG474_RS09490 (DG474_09640) - 1983016..1984266 (-) 1251 WP_000424573.1 pitrilysin family protein -
  DG474_RS09495 (DG474_09645) yaaA 1984427..1984795 (+) 369 WP_255778215.1 S4 domain-containing protein YaaA -
  DG474_RS09500 (DG474_09650) recF 1984798..1985895 (+) 1098 WP_255778216.1 DNA replication/repair protein RecF Machinery gene
  DG474_RS09505 (DG474_09655) guaB 1985948..1987426 (-) 1479 WP_000073416.1 IMP dehydrogenase -
  DG474_RS09510 (DG474_09660) trpS 1987587..1988615 (-) 1029 WP_255778218.1 tryptophan--tRNA ligase -
  DG474_RS09515 (DG474_09665) - 1988811..1990433 (+) 1623 WP_000958788.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 42051.30 Da        Isoelectric Point: 9.6082

>NTDB_id=252577 DG474_RS09500 WP_255778216.1 1984798..1985895(+) (recF) [Streptococcus oralis strain CCUG 53468]
MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIHFDNEQLRLSGLLQKKTSS
IPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQR
NTYLKSSQKIDETFLSVLDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEELSIFYQASVNFTDEEQLTSSFKM
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITNESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLNHLQNLPENLSIFNIQNGKISVNQN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=252577 DG474_RS09500 WP_255778216.1 1984798..1985895(+) (recF) [Streptococcus oralis strain CCUG 53468]
ATGTGGCTCCAACATTTAACAATTAAAACCTTTCGAAACTACAAAGAGGCAAAAATTGATTTCAATCCAAAATTAAACGT
CTTTCTAGGTCAAAATGCACAAGGAAAAACCAATATTCTAGAAGCAATCTATTTCTTGGCCTTGACACGTAGTCATCGGA
CTCGTACAGATAAGAATCTCATTCATTTTGATAACGAGCAACTCCGTCTTTCTGGCTTGCTACAGAAAAAAACAAGCTCT
ATTCCTCTAGAAATTGATTTAACGCCAAAAGGGCGTGTGACTAAAGTCAATCACTTAAAACAAGCTCGCCTCTCAGACTA
CATCGGACATATGAATGTTGTCCTCTTCGCACCTGAAGATCTCCAGCTAATTAAGGGAGCACCTTCTGTCCGTCGAAAGT
TTATAGACATCGAACTGGGACAAATTAAACCAATCTACTTGTCAGACTTGTCAAACTATAACCATATACTCAAGCAAAGA
AATACTTACCTAAAATCCAGCCAGAAGATTGATGAAACATTTCTGTCAGTATTAGATGATCAGTTAGTAGAGTATGGATG
TCGCGTTATAAAGCATCGAATAAAATTCATTAAAGACTTAGAGAAATTTGGTCAAAAAAAACACTTAGAAATTTCAAATA
AATTAGAAGAGTTGTCAATATTTTATCAAGCATCTGTCAACTTCACTGATGAAGAACAGCTAACAAGTTCTTTTAAAATG
GCTTTGGAGAAAAGCAGATCAAGAGATTTGTTCAAAAAGAATACTGGTGTCGGCCCTCATCGAGATGATATTTCTTTTTA
TATCAATGGTATGGATGCTAGTTTTGGAAGCCAAGGTCAACATCGTAGCCTTGTTCTTTCTATAAAACTGGCGGAAATTG
AGCTAATGGAAAGTATTACCAATGAGTCTCCGATACTACTGCTTGATGATGTTATGAGCGAACTCGACAATACACGGCAA
CTAAAATTACTAGAAACCATTTCTCAATCTATCCAAACCTTTATCACAACAACAAGTTTAAACCACTTGCAAAATTTACC
AGAAAACCTTAGTATTTTCAATATTCAAAACGGTAAAATTTCTGTAAATCAAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

88.219

100

0.882
  recF Bacillus subtilis subsp. subtilis str. 168

45.924

100

0.463