Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   DG474_RS04985 Genome accession   NZ_CP029257
Coordinates   1013247..1016522 (-) Length   1091 a.a.
NCBI ID   WP_200371432.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1008247..1021522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS04975 (DG474_05075) - 1008401..1009579 (-) 1179 WP_255777560.1 hypothetical protein -
  DG474_RS04980 (DG474_05080) rexA 1009597..1013250 (-) 3654 WP_255777561.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  DG474_RS04985 (DG474_05085) rexB 1013247..1016522 (-) 3276 WP_200371432.1 ATP-dependent nuclease subunit B Machinery gene
  DG474_RS04990 (DG474_05090) - 1016629..1017048 (-) 420 WP_049478249.1 EVE domain-containing protein -
  DG474_RS04995 (DG474_05095) - 1017041..1017502 (-) 462 WP_000049667.1 MarR family winged helix-turn-helix transcriptional regulator -
  DG474_RS05000 (DG474_05100) - 1017649..1018458 (+) 810 WP_195594153.1 Cof-type HAD-IIB family hydrolase -
  DG474_RS05005 (DG474_05105) - 1018599..1019507 (+) 909 WP_255777562.1 ATP-binding cassette domain-containing protein -
  DG474_RS05010 (DG474_05110) - 1019518..1020270 (+) 753 WP_000581970.1 ABC transporter permease -
  DG474_RS05015 (DG474_05115) - 1020309..1021187 (-) 879 WP_049478252.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124616.40 Da        Isoelectric Point: 5.8315

>NTDB_id=252529 DG474_RS04985 WP_200371432.1 1013247..1016522(-) (rexB) [Streptococcus oralis strain CCUG 53468]
MKLLYTDIRTSLTDILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFAITVTRFTQMARYLVLNDLPTKTS
LDDIGLGMAFYKCLAELDPKDLRVYGAIKQDPQFIQQLIELYHEMTTAQMSFLDLESLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFSQLALVIDGFTRFSAEEERVVDLLHRKGAEIVIGAYASKKAYTSPFTEGNLYQAS
VEFLHHLGAKYQTPAQDRSQTHEKMDSFDKASRLLESSYDFSELTLEVDEKDRENLQIWSCLMQKEELELVARAIRQKLH
DHPELSYKNFRILLGDVASYQLSLKTIFEQYQIPFYLGRSESMAHHPLTQYVESILRLKRYRFRQEDLINLLRTGLYTDL
SQADIDTFEQYLRYLGINGLPAFQQTFTKSHHGKFDLVHLNTLRLRILSPLETLFASRKQKTENLLQKWNTFLKNAALSK
QMQELTATMEALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDHLPKIAQNTSLLTDEERQSLNQATEEGAQLLIASSENLKKNRYTMLSLVNAARNQLILSAPSLLNENE
SKESAYLQELVSFGFSRIEKKIHQKSLSKDDMGSYHSLLSSLVAYHQQGETSNTEQDLTFVKVLARVMGKKLDQKGLTNP
ALPTSPSSKPLEKETLQALYPADKEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFEHALKLPA
ENPFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIQEEAAFGGKDQAFIQLDNGRSV
HVRGKVDRIDRLKADGALGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLLAVKSLA
GAVAEVSKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILQGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWFEKMREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=252529 DG474_RS04985 WP_200371432.1 1013247..1016522(-) (rexB) [Streptococcus oralis strain CCUG 53468]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACAGATATTTTAACCAGAGAGGCAGAAGAGCTAGTTGCTGCTGG
CAAGCGGGTCTTCTACATCGCCCCCAACTCTCTTTCATTTGAAAAAGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGCGATTACCGTCACGCGTTTCACTCAAATGGCTCGTTACCTGGTTTTAAATGACTTGCCGACTAAAACTAGT
CTAGATGACATCGGGCTTGGGATGGCTTTTTATAAGTGCCTTGCGGAACTCGATCCCAAGGACTTACGTGTTTATGGTGC
AATTAAGCAGGATCCTCAATTTATCCAGCAGTTGATTGAACTTTATCATGAGATGACGACTGCTCAGATGAGCTTTTTGG
ACTTGGAAAGTCTGACAGATGAGGATAAGCGAGCAGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTCAATCAA
GGTCAGTTGGCTCAGGGAAGTCAGTTATCTCATTTGATTGAGGCTATTGAGAATGACAAGGTAAGTAGTGATTTCAGTCA
ACTTGCCTTAGTCATTGACGGATTTACCCGTTTTTCTGCCGAGGAAGAGCGTGTAGTGGATCTACTCCACCGAAAAGGTG
CCGAGATTGTCATTGGGGCCTATGCAAGCAAGAAAGCTTATACCAGTCCGTTTACTGAAGGAAATCTCTATCAAGCCAGT
GTGGAATTTCTTCATCATTTGGGGGCAAAATACCAAACACCTGCTCAGGATCGTTCTCAGACACATGAGAAAATGGATAG
TTTTGACAAGGCCTCTCGTTTGCTGGAGTCTTCTTATGACTTTTCAGAATTAACATTGGAGGTTGATGAGAAAGACCGTG
AAAATCTGCAAATTTGGTCTTGTTTGATGCAAAAAGAGGAGTTGGAGCTGGTGGCTCGCGCTATTCGTCAGAAATTACAT
GACCATCCAGAATTAAGTTACAAGAATTTTCGTATTCTCTTGGGTGATGTGGCTTCTTACCAGTTATCGCTGAAAACCAT
TTTTGAGCAGTACCAGATTCCTTTCTATCTTGGTAGAAGTGAATCCATGGCCCATCATCCCTTAACCCAGTATGTCGAAT
CTATTTTGCGTTTGAAACGCTACCGTTTCCGTCAGGAGGATTTGATTAATCTCCTCCGAACTGGTCTGTATACTGACCTT
AGCCAAGCGGATATTGATACTTTTGAGCAATATCTCCGCTATCTTGGCATCAATGGCTTGCCAGCTTTTCAGCAAACATT
TACTAAATCCCACCATGGAAAATTTGATTTAGTTCATTTAAATACTCTTCGTTTGCGTATTTTGTCACCACTTGAAACCT
TATTTGCCAGTCGGAAGCAAAAGACTGAAAATCTCTTGCAAAAGTGGAATACTTTTCTAAAAAATGCTGCTTTAAGCAAG
CAGATGCAAGAATTGACAGCTACCATGGAAGCTCTTGAACAGGAAAGACAAGCCGAAGTTTGGAAAGCCTTCTGTCATGT
TTTAGAACAATTTGCGACGGTTTTTGCTGGTTCACAAGTTAGTCTGGAGGATTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCCCAGTATCGCACCATTCCAGCAACTGTTGACACCGTTCTGGTGCAGAGTTACGATTTGATTGCGCCCTTAACG
GCTGATTTTGTCTATGCCATTGGGCTGACTCAGGATCATTTACCAAAAATTGCGCAAAACACCAGCCTGTTAACAGACGA
AGAAAGACAAAGCCTAAACCAAGCGACTGAAGAGGGAGCACAATTACTGATTGCAAGTAGTGAAAACCTCAAGAAAAATC
GCTACACCATGCTTTCCTTAGTCAATGCTGCCCGTAATCAGTTGATTTTGTCAGCTCCAAGTCTCCTCAATGAAAATGAG
AGCAAGGAATCGGCCTATCTTCAGGAACTGGTGAGTTTTGGATTTAGCCGAATAGAGAAGAAGATTCATCAAAAAAGTCT
GTCTAAGGATGATATGGGTTCATATCACAGCCTTTTGTCTAGTCTGGTTGCCTATCATCAGCAGGGCGAGACAAGTAATA
CTGAGCAAGATTTGACCTTTGTCAAGGTTCTGGCGCGTGTGATGGGGAAAAAACTTGACCAAAAAGGTCTTACAAATCCA
GCACTCCCAACTAGCCCAAGCAGCAAGCCATTAGAGAAAGAGACCTTGCAGGCTCTCTATCCCGCTGACAAAGAGTTTTA
CCTGTCTACGTCTGGTTTGACTGAGTTTTACCGCAATGAATACAGTTATTTCCTCCGTTATGTCTTAGGTTTGCAGGAAG
AATTGCGGCTTCGTCCAGATGCTCGCAGTCACGGGAATTTCTTGCACCGCATTTTTGAGCATGCCTTGAAACTACCTGCT
GAAAATCCATTTGACCAGCGTTTGGAGCAAGCTATTCAAGAAACTAGTCAAGAACGGGAATTTGAAGCCATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTCTACTTGATGTCGCGCGAACTACGGGCCATATCCTTCGGCATAATCCAG
CCATTGAAACCATCCAAGAGGAAGCAGCATTTGGTGGTAAAGATCAAGCCTTTATTCAATTGGATAATGGTCGGAGTGTC
CATGTGCGAGGCAAGGTTGACCGCATTGACCGCCTGAAAGCTGATGGAGCGTTAGGAGTGGTAGACTACAAGTCTAGTTT
AACTCAGTTCCAGTTTCCTCATTTCTTTAATGGGCTTAATTCCCAGTTGCCAACCTATCTTGCTGCCTTAAAAAGAGAAG
GGGAGCAGAACTTTTTTGGCGCTATGTACTTGGAAATGGCTGAACCTGTCCAATCTTTATTAGCTGTTAAAAGTCTGGCA
GGAGCAGTAGCAGAAGTTAGCAAGTCTATGAAATACCAAGGTCTCTTTTTAGAAAAAGAAAGTAGTCATTTGGGAGAGTT
TTATAACAAAAACAAGGCTAATCAGCTGACAGACGAGGAATTCCAGCTCTTACTGGATTACAATGCCCATCTGTACAAAA
AGGCAGCTGAGAAGATTTTACAAGGCCAGTTTGCCATCAATCCATACACAGAGAATGGCAGAAGTATTGCCCCGTACGTT
CAGCAACACCAAGCCATCACTGGATTTGAAGCCAATTATCACTTAGGACAAGCACGTTTCCTAGAGAAGTTGGACTTAGC
TGATGGCAAGCGTCTGGTTGGAGAAAAGCTCAAGCAAGCTTGGTTTGAGAAAATGAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

90.192

100

0.902