Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AYP_RS08655 | Genome accession | NZ_CP024124 |
| Coordinates | 1753506..1753886 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain AYP-A2 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1748506..1758886
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYP_RS08625 (AYP_001690) | kdsB | 1749409..1750170 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| AYP_RS08630 (AYP_001691) | - | 1750182..1751162 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| AYP_RS08635 (AYP_001692) | - | 1751174..1751515 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AYP_RS08640 (AYP_001693) | - | 1751533..1752306 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AYP_RS08645 (AYP_001694) | - | 1752344..1752952 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AYP_RS08650 (AYP_001695) | - | 1752962..1753516 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| AYP_RS08655 (AYP_001696) | xcpV | 1753506..1753886 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AYP_RS08660 (AYP_001697) | xcpW | 1753886..1754587 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AYP_RS08665 (AYP_001698) | gspK | 1754587..1755546 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| AYP_RS08670 (AYP_001699) | - | 1755777..1756373 (+) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| AYP_RS08675 (AYP_001700) | ung | 1756424..1757137 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AYP_RS08680 (AYP_001701) | - | 1757134..1758258 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AYP_RS08685 (AYP_001702) | tadA | 1758265..1758768 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=252336 AYP_RS08655 WP_000836911.1 1753506..1753886(+) (xcpV) [Acinetobacter baumannii strain AYP-A2]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=252336 AYP_RS08655 WP_000836911.1 1753506..1753886(+) (xcpV) [Acinetobacter baumannii strain AYP-A2]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |