Detailed information NTG0252337

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AYP_RS08660
• Genome accession: NZ_CP024124
• Coordinates: 1753886..1754587 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain AYP-A2
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1748886..1759587

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AYP_RS08625 (AYP_001690)	kdsB	1749409..1750170 (+)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AYP_RS08630 (AYP_001691)	-	1750182..1751162 (+)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
AYP_RS08635 (AYP_001692)	-	1751174..1751515 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
AYP_RS08640 (AYP_001693)	-	1751533..1752306 (+)	774	WP_000497298.1	TatD family hydrolase	-
AYP_RS08645 (AYP_001694)	-	1752344..1752952 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
AYP_RS08650 (AYP_001695)	-	1752962..1753516 (+)	555	WP_000841373.1	type II secretion system protein	-
AYP_RS08655 (AYP_001696)	xcpV	1753506..1753886 (+)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
AYP_RS08660 (AYP_001697)	xcpW	1753886..1754587 (+)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AYP_RS08665 (AYP_001698)	gspK	1754587..1755546 (+)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
AYP_RS08670 (AYP_001699)	-	1755777..1756373 (+)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
AYP_RS08675 (AYP_001700)	ung	1756424..1757137 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
AYP_RS08680 (AYP_001701)	-	1757134..1758258 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
AYP_RS08685 (AYP_001702)	tadA	1758265..1758768 (+)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
AYP_RS08690 (AYP_001703)	-	1758838..1759281 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=252337 AYP_RS08660 WP_000594589.1 1753886..1754587(+) (xcpW) [Acinetobacter baumannii strain AYP-A2]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=252337 AYP_RS08660 WP_000594589.1 1753886..1754587(+) (xcpW) [Acinetobacter baumannii strain AYP-A2]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996