Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DEH18_RS00895 Genome accession   NZ_CP029241
Coordinates   213799..214398 (+) Length   199 a.a.
NCBI ID   WP_030883177.1    Uniprot ID   A0A4Y3R0Z6
Organism   Streptomyces sp. NHF165     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 208799..219398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH18_RS00865 (DEH18_00900) - 208944..209417 (+) 474 WP_159784021.1 hypothetical protein -
  DEH18_RS00870 (DEH18_00905) - 209585..209893 (+) 309 WP_236591739.1 hypothetical protein -
  DEH18_RS00885 (DEH18_00920) - 210299..212671 (+) 2373 WP_159784024.1 DNA polymerase III subunit gamma and tau -
  DEH18_RS00890 (DEH18_00925) - 213019..213357 (+) 339 WP_078873378.1 YbaB/EbfC family nucleoid-associated protein -
  DEH18_RS00895 (DEH18_00930) recR 213799..214398 (+) 600 WP_030883177.1 recombination mediator RecR Machinery gene
  DEH18_RS00900 (DEH18_00935) - 214605..215264 (+) 660 WP_030883175.1 DUF5063 domain-containing protein -
  DEH18_RS00905 (DEH18_00940) - 215251..216045 (-) 795 WP_078873366.1 winged helix-turn-helix domain-containing protein -
  DEH18_RS00910 (DEH18_00945) - 216109..216900 (-) 792 WP_159784027.1 VWA domain-containing protein -
  DEH18_RS00915 (DEH18_00950) - 217233..218513 (+) 1281 WP_030883167.1 aspartate kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21729.98 Da        Isoelectric Point: 4.8694

>NTDB_id=252335 DEH18_RS00895 WP_030883177.1 213799..214398(+) (recR) [Streptomyces sp. NHF165]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPADVRRLAHALTEVKEKVRFCSVCGNVAQEEQCRVCLDPRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMVS
AMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=252335 DEH18_RS00895 WP_030883177.1 213799..214398(+) (recR) [Streptomyces sp. NHF165]
GTGTACGAGGGCGTGGTTCAGGACCTCATCGACGAGCTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAGCCGGCCGATGTGCGCCGTCTCGCGCACGCGCTGACGGAGGTCAAGGAGAAGGTCC
GGTTCTGCTCGGTGTGCGGGAACGTGGCGCAGGAGGAGCAGTGCCGGGTCTGTCTGGATCCGCGCCGTGATCCGGCGGTC
ATCTGCGTGGTCGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACGCGGGAGTTCCGCGGCCGGTACCACGTGCTGGG
CGGGGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGATCTGCGCATCCGTGAGCTGCTGGCCCGGCTCGCGGACGGCA
CCGTGACCGAGCTGATCCTGGCGACGGACCCGAATCTGGAGGGCGAGGCGACGGCCACGTACCTCGCGCGGATGGTGTCC
GCGATGGGGCTGAAGGTGACGCGGCTGGCCAGTGGGCTGCCCGTCGGCGGGGACCTGGAGTACGCGGACGAGGTCACCCT
GGGGCGGGCCTTCGAGGGGAGGCGTCTGCTGGATGTGTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3R0Z6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447