Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CSE16_RS21125 Genome accession   NZ_CP024123
Coordinates   4266807..4267373 (-) Length   188 a.a.
NCBI ID   WP_099425685.1    Uniprot ID   A0A2D1SYU5
Organism   Solibacillus sp. R5-41     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4261807..4272373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE16_RS21105 (CSE16_21030) rplI 4262903..4263349 (-) 447 WP_099425682.1 50S ribosomal protein L9 -
  CSE16_RS21110 (CSE16_21035) - 4263346..4265319 (-) 1974 WP_099425683.1 DHH family phosphoesterase -
  CSE16_RS21115 (CSE16_21040) - 4265333..4266274 (-) 942 WP_099425684.1 YybS family protein -
  CSE16_RS21120 (CSE16_21045) rpsR 4266526..4266765 (-) 240 WP_172954456.1 30S ribosomal protein S18 -
  CSE16_RS21125 (CSE16_21050) ssbA 4266807..4267373 (-) 567 WP_099425685.1 single-stranded DNA-binding protein Machinery gene
  CSE16_RS21130 (CSE16_21055) rpsF 4267410..4267700 (-) 291 WP_099425686.1 30S ribosomal protein S6 -
  CSE16_RS21135 (CSE16_21060) - 4267869..4268882 (-) 1014 WP_099425687.1 acyl-CoA dehydrogenase -
  CSE16_RS21140 (CSE16_21065) ychF 4268990..4270090 (-) 1101 WP_099425688.1 redox-regulated ATPase YchF -
  CSE16_RS21145 (CSE16_21070) - 4270188..4270388 (-) 201 WP_099425689.1 DUF951 domain-containing protein -
  CSE16_RS21150 (CSE16_21075) - 4270392..4271282 (-) 891 WP_253896133.1 mechanosensitive ion channel family protein -
  CSE16_RS21155 (CSE16_21080) yyaC 4271398..4272030 (+) 633 WP_099425691.1 spore protease YyaC -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20625.65 Da        Isoelectric Point: 4.7719

>NTDB_id=252313 CSE16_RS21125 WP_099425685.1 4266807..4267373(-) (ssbA) [Solibacillus sp. R5-41]
MINRVVLVGRLTKDPELRYTPSGIPMARFTIAVNRTFSSQSGEKEADFIGCIAWRKQAENLANFMKKGSLIGVEGRIQTG
SFEGQDGKRVYTTDVVADSVQFLEPRGGANASQGMPNQQYGGQNYGGGQPSYNSQPNAQYGGAQPQQDSYGSYQQQPPQN
QQNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=252313 CSE16_RS21125 WP_099425685.1 4266807..4267373(-) (ssbA) [Solibacillus sp. R5-41]
ATGATTAACCGTGTAGTATTAGTCGGAAGGCTAACAAAAGATCCTGAGCTTCGATATACACCAAGTGGCATCCCAATGGC
ACGTTTTACAATTGCTGTAAACCGTACGTTTTCAAGTCAATCTGGTGAAAAAGAAGCAGACTTTATTGGTTGCATTGCTT
GGAGAAAACAAGCGGAGAACTTAGCAAACTTCATGAAAAAAGGGAGTTTGATTGGTGTTGAAGGGCGTATCCAAACAGGT
AGCTTTGAAGGACAAGATGGGAAACGTGTTTACACAACGGATGTTGTAGCAGATTCTGTGCAGTTCTTAGAACCACGCGG
AGGAGCAAATGCATCTCAAGGTATGCCAAATCAGCAGTATGGCGGACAAAATTATGGAGGCGGCCAGCCGTCTTATAATA
GTCAACCAAATGCTCAATATGGCGGCGCGCAACCACAGCAGGATTCTTATGGTTCGTATCAACAACAGCCACCTCAAAAT
CAGCAAAATTATACACGTGTAGATGAGGATCCATTTGCTAATAGCAAAGGACCGATTGAAGTATCTGAGGACGATTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1SYU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.787

100

0.548
  ssb Latilactobacillus sakei subsp. sakei 23K

47.872

100

0.479

Multiple sequence alignment