Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   DEH83_RS07410 Genome accession   NZ_CP029207
Coordinates   1448964..1450757 (+) Length   597 a.a.
NCBI ID   WP_247927324.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1443964..1455757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS07395 (DEH83_07425) nrdH 1445975..1446193 (-) 219 WP_003023812.1 glutaredoxin-like protein NrdH -
  DEH83_RS07400 (DEH83_07430) - 1446586..1446849 (+) 264 WP_003068444.1 phosphocarrier protein HPr -
  DEH83_RS07405 (DEH83_07435) ptsP 1446851..1448584 (+) 1734 WP_255776500.1 phosphoenolpyruvate--protein phosphotransferase -
  DEH83_RS07410 (DEH83_07440) uvrC 1448964..1450757 (+) 1794 WP_247927324.1 excinuclease ABC subunit UvrC Machinery gene
  DEH83_RS07415 (DEH83_07445) - 1450879..1451703 (+) 825 WP_255776501.1 ABC transporter ATPase -
  DEH83_RS07420 (DEH83_07450) - 1452100..1452705 (+) 606 WP_255776502.1 nitroreductase family protein -
  DEH83_RS07425 (DEH83_07455) pepV 1452725..1454125 (+) 1401 WP_255776503.1 dipeptidase PepV -
  DEH83_RS07430 (DEH83_07460) - 1454181..1455038 (+) 858 WP_255776504.1 SDR family oxidoreductase -
  DEH83_RS07435 (DEH83_07465) - 1455048..1455632 (+) 585 WP_255776505.1 uracil-DNA glycosylase family protein -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 68854.25 Da        Isoelectric Point: 9.1341

>NTDB_id=252151 DEH83_RS07410 WP_247927324.1 1448964..1450757(+) (uvrC) [Streptococcus constellatus strain TCV107]
MNNLIKSKLELLPTSPGCYIHKDKNGTIIYVGKAKNLRNRVRSYFRGSHDTKTEALVSEVEDFEFIVTESNIEALLLEIN
LIKENQPKYNIMLKDDKSYPFIKITNETYPRLIITRQVKKDGGLYFGPYPDVGAANEIKRLLDRIFPFRKCTNPPEKVCF
YYHIGQCRAHTICHNDPHFFQEMAQEVADFLKGHDNKIIDELKGKMTSAAEKMEFEKAAEYRDLLQSIATLRTKQRVMAR
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERDVNMFPYYNDPDEDFLTYIGQFYQNTSHLVPNEILIPSDIDEESVRAV
VDTKILKPQRGEKKQLVNLAIKNAQVSLQQKFDLLEKSVEKTQGAIENLGRLLNIPTPVRIESFDNSNIMGTSPVSAMVV
FINGKPSKKDYRKYKIKTVIGPDDYASMREVIKRRYSRVMRDGLIPPDLIVIDGGQGQVNIAKDVIQHQLGLDIPIAGLQ
KNDKHQTHELLFGDPLEVVELSRNSQEFFLLQRIQDEVHRFAITFHRQLRSKNSFSSQLDGIEGLGPKRKQNLMKHFKSL
TKIKEASVEEIVEVGVPRKVAEAVQRKLREPRVELEQ

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=252151 DEH83_RS07410 WP_247927324.1 1448964..1450757(+) (uvrC) [Streptococcus constellatus strain TCV107]
ATGAACAACTTGATTAAATCAAAATTGGAATTATTGCCGACTAGCCCAGGCTGTTATATCCACAAGGATAAAAATGGTAC
GATCATCTATGTAGGAAAAGCCAAGAATCTGCGCAATCGGGTGCGCTCGTATTTTCGCGGAAGTCATGATACTAAAACGG
AAGCGTTAGTGTCTGAGGTTGAGGATTTTGAGTTTATTGTCACTGAGTCTAATATTGAAGCTTTGTTGCTTGAAATCAAT
CTGATCAAGGAAAATCAACCCAAATACAACATCATGCTTAAGGACGATAAGTCCTATCCTTTTATCAAAATTACCAATGA
GACATATCCGCGGCTTATAATCACACGTCAGGTTAAGAAAGATGGTGGTTTATATTTTGGCCCGTATCCTGATGTAGGTG
CTGCGAATGAAATTAAGCGCCTGCTGGATCGCATTTTTCCTTTCCGCAAGTGTACCAATCCACCTGAGAAAGTTTGCTTC
TACTATCATATCGGACAGTGTCGAGCTCATACTATCTGCCATAATGATCCACATTTCTTTCAAGAGATGGCTCAAGAAGT
AGCAGATTTCCTCAAAGGTCATGATAATAAGATTATTGATGAATTGAAAGGAAAAATGACTAGTGCTGCTGAAAAGATGG
AATTTGAAAAAGCGGCTGAATACCGAGATTTGCTTCAAAGTATTGCGACACTTCGCACCAAGCAACGAGTGATGGCAAGG
GATTTACAGAATCGGGATGTCTTTGGCTATTATGTGGACAAAGGATGGATGTGTGTGCAGGTTTTCTTTGTCCGTCAAGG
AAAACTCATTGAGCGAGATGTAAATATGTTTCCTTATTACAATGACCCTGACGAGGATTTTTTGACCTATATTGGACAAT
TTTATCAGAATACATCTCATCTGGTGCCCAATGAAATTTTGATTCCGTCTGATATTGACGAGGAATCAGTACGGGCTGTG
GTGGATACAAAAATTCTCAAGCCTCAACGAGGAGAAAAGAAACAGCTGGTCAATCTGGCAATTAAGAATGCTCAAGTTAG
TTTACAGCAGAAGTTTGACTTATTAGAGAAATCTGTTGAAAAAACGCAAGGAGCAATTGAAAATCTAGGCCGACTCCTCA
ATATTCCCACTCCAGTTCGAATTGAGTCGTTTGATAATTCCAATATTATGGGAACAAGTCCTGTTTCAGCTATGGTGGTT
TTTATCAATGGCAAACCCAGCAAAAAAGATTATCGCAAGTATAAGATTAAGACAGTTATCGGTCCGGATGACTATGCCAG
TATGCGGGAAGTCATCAAGCGTCGCTACAGCCGAGTTATGCGAGATGGTTTAATACCACCTGATCTGATTGTCATTGATG
GTGGTCAGGGCCAAGTCAACATTGCTAAAGACGTCATTCAACATCAATTAGGTTTAGATATTCCTATCGCTGGTTTGCAA
AAGAACGACAAGCATCAGACTCATGAATTACTTTTTGGTGATCCGCTGGAAGTGGTCGAATTGTCTCGCAATTCGCAGGA
ATTTTTCCTTTTGCAACGCATCCAAGATGAAGTCCACCGCTTTGCCATTACCTTCCATCGCCAGCTCCGGTCTAAGAATT
CCTTCTCATCACAACTAGATGGCATTGAAGGACTGGGGCCTAAACGCAAGCAAAATCTCATGAAGCATTTCAAATCGCTA
ACCAAGATTAAAGAAGCAAGTGTTGAGGAAATTGTCGAAGTAGGCGTACCGCGAAAAGTTGCAGAGGCTGTGCAGAGAAA
ATTGAGAGAGCCTAGAGTAGAACTAGAACAGTAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

UvrB/uvrC motif (UVR)

(197-228)

Helix-hairpin-helix domain (HHH_5)

(538-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

90.306

98.492

0.889
  uvrC Streptococcus pneumoniae R6

89.966

98.492

0.886
  uvrC Streptococcus pneumoniae D39

89.966

98.492

0.886

Multiple sequence alignment