Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   DEH83_RS07075 Genome accession   NZ_CP029207
Coordinates   1385642..1387300 (+) Length   552 a.a.
NCBI ID   WP_255776473.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1380642..1392300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS07045 (DEH83_07055) - 1381068..1381907 (+) 840 WP_255776470.1 NAD(P)H-hydrate dehydratase -
  DEH83_RS07050 (DEH83_07060) xseA 1382000..1383340 (+) 1341 WP_255776471.1 exodeoxyribonuclease VII large subunit -
  DEH83_RS07055 (DEH83_07065) - 1383318..1383530 (+) 213 WP_003068213.1 exodeoxyribonuclease VII small subunit -
  DEH83_RS07060 (DEH83_07070) - 1383527..1384429 (+) 903 WP_255776472.1 polyprenyl synthetase family protein -
  DEH83_RS07065 (DEH83_07075) - 1384395..1385210 (+) 816 WP_039677314.1 TlyA family RNA methyltransferase -
  DEH83_RS07070 (DEH83_07080) - 1385203..1385634 (+) 432 WP_006269766.1 arginine repressor -
  DEH83_RS07075 (DEH83_07085) recN 1385642..1387300 (+) 1659 WP_255776473.1 DNA repair protein RecN Machinery gene
  DEH83_RS07080 (DEH83_07090) - 1387611..1388342 (+) 732 WP_187327848.1 metallophosphoesterase -
  DEH83_RS07085 (DEH83_07095) - 1388405..1389376 (-) 972 WP_003068226.1 siderophore ABC transporter substrate-binding protein -
  DEH83_RS07090 (DEH83_07100) - 1389398..1390150 (-) 753 WP_255776474.1 ABC transporter ATP-binding protein -
  DEH83_RS07095 (DEH83_07105) - 1390151..1391113 (-) 963 WP_039677309.1 iron chelate uptake ABC transporter family permease subunit -
  DEH83_RS07100 (DEH83_07110) ceuB 1391106..1392059 (-) 954 WP_006269745.1 ABC transporter permease Machinery gene

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62667.97 Da        Isoelectric Point: 4.5523

>NTDB_id=252145 DEH83_RS07075 WP_255776473.1 1385642..1387300(+) (recN) [Streptococcus constellatus strain TCV107]
MLLEISIKNFAIIEEVSLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGAPKAEIEGLFAIEQSKALVEIF
EQQGLDMTDELIIRREIFQNGRSISRINGQMVNLSVLRSVGQHLVDIHGQHDQEELMRSQLHIAMLDEFGDEVFFKLKAD
YQQTFDQYRQLRKQVITIQKNQEENKARIDMLEYQIAEIEAANLRAGEDLALNQERDKLLNHKQIADTLTNAYAMLDNEE
FSSLSNIRAAMNDMEAIEEYDVTYKEIATNLSESYYVLADATKRLEDILDNMDFDGDRLLEVERRLDLIYSITRKYGGHV
EDVLAYLEQISKEYALLTGKNLSSNDLDQELRKLEKDLVSLAGRLSQERHELAQQLEAEIQQELKDLYMEKANFRVQFTK
GKFSREGNEHVEFYISTNPGEDYKPLVKIASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADYQFFIEKISDEYSTVSTVRLLSDEERIEEIAKMLAGENVTEAALTQARELLKQ

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=252145 DEH83_RS07075 WP_255776473.1 1385642..1387300(+) (recN) [Streptococcus constellatus strain TCV107]
ATGTTACTTGAAATTTCCATTAAAAATTTTGCAATTATTGAAGAGGTTTCTCTCAATTTTGAGCAAGGCATGACTGTTTT
GACAGGTGAAACGGGTGCTGGGAAGTCTATTATTATTGATGCTATGAACATGATGTTGGGAAGCCGAGCAACAACAGATG
TGATTCGTCATGGCGCTCCGAAAGCTGAGATTGAAGGACTGTTTGCGATTGAACAGAGTAAAGCTTTGGTTGAAATCTTT
GAGCAGCAAGGGCTTGATATGACAGATGAGTTGATTATTCGGCGAGAAATTTTCCAAAACGGTCGCAGTATCAGTCGTAT
TAATGGTCAAATGGTCAATTTATCCGTTTTGCGATCGGTTGGACAGCATTTGGTGGATATTCATGGTCAGCACGACCAAG
AAGAGTTGATGCGTTCCCAGTTACATATTGCTATGTTGGACGAGTTTGGAGATGAAGTATTTTTTAAACTCAAAGCGGAT
TATCAGCAAACTTTTGATCAGTATCGTCAGTTGCGTAAGCAAGTTATAACGATTCAGAAGAATCAAGAAGAAAATAAGGC
GCGAATTGATATGCTGGAATATCAGATTGCAGAGATTGAGGCGGCCAATTTAAGAGCTGGCGAAGATTTGGCATTAAACC
AAGAACGCGATAAATTACTCAACCATAAGCAGATTGCAGACACTTTGACAAATGCCTACGCTATGCTGGATAATGAGGAG
TTTTCGAGTTTATCTAATATTCGAGCTGCCATGAATGATATGGAAGCTATCGAAGAGTACGATGTTACTTACAAAGAAAT
TGCGACTAATCTTTCTGAGTCTTACTATGTACTGGCAGACGCAACAAAGCGTTTGGAAGACATTCTAGATAACATGGATT
TTGATGGTGATCGTCTCTTAGAAGTTGAAAGGCGTCTAGATCTAATTTATAGCATTACTCGTAAATACGGTGGGCATGTG
GAGGATGTGTTAGCTTATTTAGAGCAAATTTCTAAAGAATATGCGCTTTTGACTGGAAAGAATCTCTCATCAAATGATTT
GGATCAAGAGTTGAGAAAGCTAGAGAAAGATTTGGTCTCTCTAGCAGGTCGTCTGAGTCAGGAACGGCACGAATTAGCCC
AGCAATTAGAAGCAGAGATTCAGCAAGAATTAAAAGATCTCTATATGGAAAAGGCGAATTTTCGAGTTCAATTTACCAAA
GGAAAGTTTAGCCGCGAGGGAAATGAGCATGTTGAATTTTACATTTCGACTAATCCGGGCGAAGATTACAAACCGCTCGT
TAAGATTGCTTCCGGTGGCGAATTGTCACGTTTGATGTTGGCAATCAAGTCTGCTTTTTCTCGTAAAGAAGGCAAGACAA
GCATTGTTTTTGATGAAGTAGACACAGGCGTATCTGGACGTGTTGCGCAAGCTATTGCTCAGAAAATTCATAAAATTGGC
TCCAATGGACAAGTTCTTGCCATCTCGCACCTGCCACAAGTGATTGCTATTGCAGACTATCAATTTTTCATCGAGAAAAT
ATCAGATGAATATTCAACAGTTTCAACAGTTCGCTTGTTGTCTGATGAAGAGCGTATCGAAGAGATTGCTAAAATGTTAG
CGGGTGAAAATGTGACTGAAGCAGCTCTCACGCAGGCTAGAGAACTATTGAAACAGTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.211

100

0.457

Multiple sequence alignment