Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DEH83_RS07100 Genome accession   NZ_CP029207
Coordinates   1391106..1392059 (-) Length   317 a.a.
NCBI ID   WP_006269745.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386106..1397059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS07080 (DEH83_07090) - 1387611..1388342 (+) 732 WP_187327848.1 metallophosphoesterase -
  DEH83_RS07085 (DEH83_07095) - 1388405..1389376 (-) 972 WP_003068226.1 siderophore ABC transporter substrate-binding protein -
  DEH83_RS07090 (DEH83_07100) - 1389398..1390150 (-) 753 WP_255776474.1 ABC transporter ATP-binding protein -
  DEH83_RS07095 (DEH83_07105) - 1390151..1391113 (-) 963 WP_039677309.1 iron chelate uptake ABC transporter family permease subunit -
  DEH83_RS07100 (DEH83_07110) ceuB 1391106..1392059 (-) 954 WP_006269745.1 ABC transporter permease Machinery gene
  DEH83_RS07105 (DEH83_07115) - 1392295..1393128 (+) 834 WP_006269763.1 DegV family protein -
  DEH83_RS07110 (DEH83_07120) - 1393257..1393532 (+) 276 WP_003036014.1 HU family DNA-binding protein -
  DEH83_RS07115 (DEH83_07125) - 1393701..1394162 (+) 462 WP_003035860.1 Fur family transcriptional regulator -
  DEH83_RS07120 (DEH83_07130) - 1394300..1394992 (+) 693 WP_003036126.1 phosphoglycerate mutase -
  DEH83_RS07125 (DEH83_07135) - 1395150..1396313 (-) 1164 WP_255776475.1 site-specific integrase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35351.20 Da        Isoelectric Point: 10.0791

>NTDB_id=252146 DEH83_RS07100 WP_006269745.1 1391106..1392059(-) (ceuB) [Streptococcus constellatus strain TCV107]
MKQTKFLGILCLILAFISIMVGASSFSWHKLLSGETNTWLLFLESRLPRTISIILAGSSMSIAGLLMQTVTQNHFAAPST
IGTVNAAKFGMLLSLFFFPTANLAQKMLFAFVSSIFFTIIFIRFIRKLSFKEKWLLPLVGIIYSGVISAAAEILAYRFDL
VQSMTSWTQGSFAMIQTHQYEWLFLSFVILIAVWRLSATFTIMNLGEDASHNLGISFYQMEGLSLFLIALTTSVTMITVG
SLPFIGVIIPNIVRKFYGDHITRIKSITALTGAGLILICDIMSRMVIRPYEISVSLILGIFGSLTFIYLLWRGATHE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=252146 DEH83_RS07100 WP_006269745.1 1391106..1392059(-) (ceuB) [Streptococcus constellatus strain TCV107]
ATGAAACAGACAAAATTTTTAGGAATTCTTTGTCTTATACTGGCTTTCATTTCAATTATGGTTGGTGCTAGCAGTTTTTC
TTGGCATAAACTACTCAGTGGTGAGACTAACACTTGGCTATTATTTTTAGAGTCGCGCTTACCAAGGACTATTAGTATCA
TTTTAGCAGGATCTAGCATGAGTATTGCGGGACTTCTGATGCAAACTGTTACACAGAATCATTTTGCGGCGCCTAGTACA
ATTGGAACAGTAAATGCTGCAAAGTTCGGTATGCTTCTCAGCCTCTTCTTCTTTCCAACGGCGAATTTGGCTCAAAAAAT
GCTCTTCGCCTTTGTCTCTTCTATTTTTTTTACGATTATTTTTATTAGATTTATCAGAAAATTATCATTTAAGGAAAAAT
GGTTACTGCCACTTGTCGGAATTATTTATAGTGGTGTCATTAGCGCAGCTGCTGAAATTCTTGCCTATCGTTTTGATCTA
GTGCAAAGTATGACATCGTGGACGCAAGGATCTTTTGCAATGATTCAGACACATCAATATGAGTGGCTTTTTTTGAGTTT
TGTTATTCTGATTGCTGTCTGGCGGTTGTCTGCTACTTTTACAATTATGAATCTAGGAGAAGATGCTAGCCATAATCTAG
GGATATCTTTTTATCAAATGGAAGGATTGAGCCTATTTCTCATTGCTCTCACAACCAGTGTGACAATGATTACAGTAGGC
TCGCTTCCTTTCATAGGCGTGATTATACCAAATATTGTGCGAAAATTTTATGGAGATCATATCACGCGCATCAAAAGTAT
TACTGCCCTGACGGGAGCAGGCTTAATTTTAATCTGTGATATTATGTCACGTATGGTGATCCGTCCCTACGAAATCTCAG
TTAGTTTGATTCTGGGAATTTTTGGAAGTTTAACATTCATTTATCTTTTATGGCGAGGTGCCACTCATGAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

38.141

98.423

0.375

Multiple sequence alignment