Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DEH83_RS02165 Genome accession   NZ_CP029207
Coordinates   444384..445016 (-) Length   210 a.a.
NCBI ID   WP_003070225.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 439384..450016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS02135 (DEH83_02115) - 439751..440527 (+) 777 WP_049476960.1 aminoglycoside 3'-phosphotransferase -
  DEH83_RS02140 (DEH83_02120) recX 440590..441366 (+) 777 WP_150203055.1 recombination regulator RecX Regulator
  DEH83_RS02145 (DEH83_02125) - 441453..441986 (+) 534 WP_003070217.1 DUF402 domain-containing protein -
  DEH83_RS02150 (DEH83_02130) - 442106..442426 (+) 321 WP_255776950.1 DUF960 domain-containing protein -
  DEH83_RS02155 (DEH83_02135) - 442543..442935 (-) 393 WP_020997633.1 S1 RNA-binding domain-containing protein -
  DEH83_RS02160 (DEH83_02140) - 442937..444337 (-) 1401 WP_070484181.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  DEH83_RS02165 (DEH83_02145) vraR 444384..445016 (-) 633 WP_003070225.1 response regulator transcription factor Regulator
  DEH83_RS02170 (DEH83_02150) - 445018..446014 (-) 997 Protein_431 sensor histidine kinase -
  DEH83_RS02175 (DEH83_02155) liaF 446011..446709 (-) 699 WP_003070232.1 cell wall-active antibiotics response protein LiaF -
  DEH83_RS02180 (DEH83_02160) stkP 446965..448848 (-) 1884 WP_255776951.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  DEH83_RS02185 (DEH83_02165) - 448845..449585 (-) 741 WP_003028411.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23618.22 Da        Isoelectric Point: 4.7982

>NTDB_id=252084 DEH83_RS02165 WP_003070225.1 444384..445016(-) (vraR) [Streptococcus constellatus strain TCV107]
MQILLVDDHEMVRLGLKSYLDLQDDVDVVAEASNGREGVEKALALRPDVIMMDIVMPEMSGIEATLAILKEWPEAKILIL
TSYLDNEKIYPVLDAGAKGYMLKTSSADDILRAVRKVAKGELAIETEVSQKVEYHRNHIELHEELTARERDILGLLAKGY
ENQRIADELFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHHLVPQDDI

Nucleotide


Download         Length: 633 bp        

>NTDB_id=252084 DEH83_RS02165 WP_003070225.1 444384..445016(-) (vraR) [Streptococcus constellatus strain TCV107]
ATGCAGATTTTATTAGTAGATGACCATGAGATGGTACGACTTGGCTTGAAAAGTTATTTGGATTTACAAGATGATGTTGA
TGTAGTGGCAGAAGCTTCAAACGGTCGTGAAGGAGTTGAAAAAGCTTTAGCATTACGACCAGATGTTATTATGATGGATA
TTGTTATGCCTGAAATGAGTGGAATTGAAGCAACTCTAGCTATTTTAAAAGAATGGCCTGAAGCTAAGATTCTCATTCTG
ACTTCTTATTTGGATAATGAAAAAATTTACCCAGTTTTAGATGCAGGAGCTAAAGGATACATGCTTAAAACATCTAGTGC
TGACGATATCTTACGAGCAGTTCGAAAGGTAGCCAAGGGTGAACTTGCTATTGAAACAGAGGTCAGTCAGAAAGTGGAAT
ACCATCGAAATCATATTGAATTACATGAAGAGCTAACAGCGCGTGAGCGCGATATTTTAGGACTACTGGCGAAGGGGTAT
GAAAATCAACGCATAGCAGATGAGTTGTTTATTTCTTTAAAGACAGTGAAAACGCATGTGTCGAATATTTTGTCCAAATT
GGCAGTAAGTGATCGTACACAAGCTGTTGTCTATGCCTTCCAGCATCACCTCGTCCCACAGGATGATATTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-199)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

53.883

98.095

0.529
  degU Bacillus subtilis subsp. subtilis str. 168

39.286

100

0.419