Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DEF50_RS10200 Genome accession   NZ_CP029180
Coordinates   1896405..1896920 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain H9Ecoli     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1891405..1901920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEF50_RS10175 (DEF50_10175) ygaZ 1891804..1892541 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  DEF50_RS10180 (DEF50_10180) ygaH 1892531..1892866 (+) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  DEF50_RS10185 (DEF50_10185) emrR 1892957..1893487 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  DEF50_RS10190 (DEF50_10190) emrA 1893614..1894786 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  DEF50_RS10195 (DEF50_10195) emrB 1894803..1896341 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  DEF50_RS10200 (DEF50_10200) luxS 1896405..1896920 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  DEF50_RS10205 (DEF50_10205) gshA 1897070..1898626 (-) 1557 WP_072645511.1 glutamate--cysteine ligase -
  DEF50_RS10210 (DEF50_10210) yqaA 1898699..1899127 (-) 429 WP_001287454.1 YqaA family protein -
  DEF50_RS10215 (DEF50_10215) yqaB 1899124..1899690 (-) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  DEF50_RS10245 (DEF50_10245) csrA 1901148..1901333 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=252006 DEF50_RS10200 WP_001130211.1 1896405..1896920(-) (luxS) [Escherichia coli strain H9Ecoli]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=252006 DEF50_RS10200 WP_001130211.1 1896405..1896920(-) (luxS) [Escherichia coli strain H9Ecoli]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment