Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DDV95_RS11085 Genome accession   NZ_CP029164
Coordinates   2143340..2144077 (-) Length   245 a.a.
NCBI ID   WP_000197684.1    Uniprot ID   -
Organism   Escherichia coli strain 104     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2138340..2149077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV95_RS11055 (DDV95_11055) tyrA 2138713..2139834 (+) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  DDV95_RS11060 (DDV95_11060) pheA 2139877..2141037 (-) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  DDV95_RS11065 (DDV95_11065) pheL 2141136..2141183 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  DDV95_RS11070 (DDV95_11070) raiA 2141287..2141628 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  DDV95_RS11080 (DDV95_11080) - 2141889..2143236 (-) 1348 Protein_2016 IS4-like element IS4 family transposase -
  DDV95_RS11085 (DDV95_11085) comL 2143340..2144077 (-) 738 WP_000197684.1 outer membrane protein assembly factor BamD Machinery gene
  DDV95_RS11090 (DDV95_11090) rluD 2144212..2145192 (+) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DDV95_RS11095 (DDV95_11095) yfiH 2145189..2145920 (+) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  DDV95_RS11100 (DDV95_11100) clpC 2146050..2148623 (+) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27811.36 Da        Isoelectric Point: 6.4874

>NTDB_id=251768 DDV95_RS11085 WP_000197684.1 2143340..2144077(-) (comL) [Escherichia coli strain 104]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=251768 DDV95_RS11085 WP_000197684.1 2143340..2144077(-) (comL) [Escherichia coli strain 104]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384