Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SAB_RS01660 Genome accession   NC_007622
Coordinates   362354..363199 (+) Length   281 a.a.
NCBI ID   WP_011382178.1    Uniprot ID   -
Organism   Staphylococcus aureus RF122     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 357354..368199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS01645 (SAB0307c) - 357620..359461 (-) 1842 WP_000077327.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  SAB_RS01650 (SAB0308c) metC 359430..360590 (-) 1161 WP_000175848.1 cystathionine beta-lyase MetC -
  SAB_RS01655 (SAB0309c) - 360587..361690 (-) 1104 WP_000655714.1 PLP-dependent transferase -
  SAB_RS01660 (SAB0311) spo0J 362354..363199 (+) 846 WP_011382178.1 ParB/RepB/Spo0J family partition protein Regulator
  SAB_RS01665 (SAB0312) - 363353..364234 (+) 882 WP_000373074.1 mechanosensitive ion channel family protein -
  SAB_RS01670 (SAB0313) - 364264..364467 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  SAB_RS01675 (SAB0314) ychF 364479..365576 (+) 1098 WP_001218727.1 redox-regulated ATPase YchF -
  SAB_RS01680 (SAB0315c) - 365662..365853 (-) 192 WP_001052483.1 hypothetical protein -
  SAB_RS01685 (SAB0316) rpsF 366097..366393 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  SAB_RS01690 (SAB0317) ssbA 366414..366917 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  SAB_RS01695 (SAB0318) rpsR 366969..367211 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32815.85 Da        Isoelectric Point: 10.0000

>NTDB_id=25173 SAB_RS01660 WP_011382178.1 362354..363199(+) (spo0J) [Staphylococcus aureus RF122]
MSELSKSEDQRITKTKDEQIKQIDMSDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=25173 SAB_RS01660 WP_011382178.1 362354..363199(+) (spo0J) [Staphylococcus aureus RF122]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATGTCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTACAAGGCTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTCAGATATTTAGAAAATCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTTGGCAAAATCTCATTTGAGTTTGAATCACAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381

Multiple sequence alignment