Detailed information NTG0251677

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: C3363_RS01945
• Genome accession: NZ_CP029150
• Coordinates: 394354..395070 (+)
• Length: 238 a.a.
• NCBI ID: WP_010787263.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain GZ20170512
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 389354..400070

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C3363_RS01905 (C3363_01930)	-	389884..390135 (-)	252	WP_005713159.1	hypothetical protein	-
C3363_RS01910 (C3363_01935)	-	390132..390323 (-)	192	WP_015940041.1	hypothetical protein	-
C3363_RS01915 (C3363_01940)	crp	390578..391252 (-)	675	WP_010787261.1	cAMP-activated global transcriptional regulator CRP	Regulator
C3363_RS01920 (C3363_01945)	-	391319..391543 (-)	225	WP_005713165.1	YheU family protein	-
C3363_RS01925 (C3363_01950)	slmA	391551..392156 (-)	606	WP_005713169.1	nucleoid occlusion factor SlmA	-
C3363_RS01930 (C3363_01955)	dut	392165..392620 (-)	456	WP_005713171.1	dUTP diphosphatase	-
C3363_RS01935 (C3363_01960)	-	392646..392972 (-)	327	WP_005713172.1	hypothetical protein	-
C3363_RS01940 (C3363_01965)	coaBC	392982..394184 (-)	1203	WP_010787262.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
C3363_RS01945 (C3363_01970)	radC	394354..395070 (+)	717	WP_010787263.1	RadC family protein	Machinery gene
C3363_RS01950 (C3363_01975)	rpmB	395196..395432 (+)	237	WP_005713177.1	50S ribosomal protein L28	-
C3363_RS01955 (C3363_01980)	rpmG	395444..395614 (+)	171	WP_005624479.1	50S ribosomal protein L33	-
C3363_RS01960 (C3363_01985)	-	395785..396639 (+)	855	WP_234886084.1	TonB-dependent receptor	-
C3363_RS01965 (C3363_01990)	-	396808..397173 (+)	366	WP_010787265.1	YgiW/YdeI family stress tolerance OB fold protein	-
C3363_RS01970 (C3363_01995)	-	397234..397905 (+)	672	WP_010787266.1	response regulator	-
C3363_RS01975 (C3363_02000)	qseC	397892..399292 (+)	1401	WP_005713184.1	quorum sensing histidine kinase QseC	-
C3363_RS01980 (C3363_02005)	-	399414..399476 (+)	63	Protein_377	RNA-guided endonuclease TnpB family protein	-
C3363_RS01985 (C3363_02010)	-	399684..399971 (+)	288	WP_005713186.1	co-chaperone GroES	-

Sequence

Protein

• Length: 238 a.a.
• Molecular weight: 27225.39 Da
• Isoelectric Point: 4.7438

>NTDB_id=251677 C3363_RS01945 WP_010787263.1 394354..395070(+) (radC) [Glaesserella parasuis strain GZ20170512]
MNESSSELMPREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQL
QATKEMTKRYLSQQMKVNEMVDSPYLAVMYFQSELESWEREVFMVIFLDNQNRLIKTEKMFYGTINQASVHPREIIKEAL
KCNAAAILVAHNHPSGNCNPSEADRFLTRKIEMACDLVDIRFVDHIIVGKGDYFSFEEEKFEQENYEFPPCLDELKQV

Nucleotide

• Length: 717 bp

>NTDB_id=251677 C3363_RS01945 WP_010787263.1 394354..395070(+) (radC) [Glaesserella parasuis strain GZ20170512]
ATGAATGAAAGTTCTAGTGAATTAATGCCAAGAGAAAAATTGCTGAAATTTGGTGCTGAAGCCTTAAGTGATGCTGAGCT
ATTGGCAATCTTTTTACGTACAGGAATTAAAGGGATACCCGTGATGGATCTATCGGAAAGCGTACTCACTGCCTTTGGTT
CATTACGGGGATTGCTGTCAGCAACATTAGAAGATTTCTGTAAAATCAAAGGATTAGGACAAATTCAGTATATTCAACTT
CAGGCAACCAAAGAGATGACGAAACGCTATTTATCGCAACAAATGAAAGTAAATGAAATGGTAGATAGCCCCTATTTAGC
CGTAATGTATTTTCAATCGGAATTGGAATCTTGGGAGCGAGAAGTATTTATGGTGATCTTTTTAGATAACCAAAATAGGT
TGATCAAAACAGAAAAAATGTTTTACGGTACGATCAACCAAGCCTCAGTTCACCCTCGTGAAATCATTAAAGAAGCCTTG
AAGTGTAATGCCGCCGCCATTTTAGTTGCACATAACCACCCATCTGGCAACTGCAATCCAAGTGAGGCAGATCGGTTTTT
GACTCGAAAAATAGAAATGGCGTGTGATTTAGTCGATATTCGCTTTGTTGATCATATTATTGTTGGCAAAGGTGACTATT
TTTCGTTCGAAGAAGAAAAGTTTGAACAGGAAAATTACGAATTTCCCCCTTGTTTAGATGAACTAAAGCAAGTATAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-220)

• UPF0758 N-terminal (UPF0758_N) (5-77)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	61.111	90.756	0.555