Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SAB_RS10735 Genome accession   NC_007622
Coordinates   2115628..2116023 (-) Length   131 a.a.
NCBI ID   WP_000932698.1    Uniprot ID   -
Organism   Staphylococcus aureus RF122     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2110628..2121023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS10705 (SAB1975c) thiE 2111090..2111731 (-) 642 WP_000483166.1 thiamine phosphate synthase -
  SAB_RS10710 (SAB1976c) thiM 2111733..2112524 (-) 792 WP_001108490.1 hydroxyethylthiazole kinase -
  SAB_RS10715 (SAB1977c) thiD 2112508..2113337 (-) 830 Protein_2043 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SAB_RS10720 (SAB1978c) tenA 2113330..2114019 (-) 690 WP_000396070.1 thiaminase II -
  SAB_RS10730 (SAB1980c) sceD 2114544..2115239 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  SAB_RS10735 (SAB1981c) ssb 2115628..2116023 (-) 396 WP_000932698.1 single-stranded DNA-binding protein Machinery gene
  SAB_RS10740 (SAB1982) - 2116217..2116657 (+) 441 WP_000846748.1 YwpF-like family protein -
  SAB_RS10745 (SAB1983c) fabZ 2116714..2117154 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SAB_RS10750 (SAB1984c) murA 2117188..2118453 (-) 1266 WP_000358003.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SAB_RS10755 (SAB1985c) - 2118564..2118797 (-) 234 WP_000384523.1 DUF1146 family protein -
  SAB_RS10760 - 2118929..2119006 (-) 78 Protein_2051 hypothetical protein -
  SAB_RS10765 (SAB1986c) - 2119321..2119725 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15060.13 Da        Isoelectric Point: 5.6824

>NTDB_id=25167 SAB_RS10735 WP_000932698.1 2115628..2116023(-) (ssb) [Staphylococcus aureus RF122]
MLNKIVIVGRMTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=25167 SAB_RS10735 WP_000932698.1 2115628..2116023(-) (ssb) [Staphylococcus aureus RF122]
ATGCTAAATAAAATCGTAATTGTCGGGAGAATGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCGAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment