Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SAB_RS07795 Genome accession   NC_007622
Coordinates   1580250..1580936 (-) Length   228 a.a.
NCBI ID   WP_078062662.1    Uniprot ID   -
Organism   Staphylococcus aureus RF122     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1575250..1585936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS07775 (SAB1458) rpsT 1576162..1576413 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  SAB_RS07780 (SAB1459c) holA 1576458..1577432 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  SAB_RS07785 (SAB1460c) - 1577489..1579692 (-) 2204 Protein_1514 DNA internalization-related competence protein ComEC/Rec2 -
  SAB_RS07790 (SAB1461c) - 1579697..1580158 (-) 462 WP_000439693.1 ComE operon protein 2 -
  SAB_RS07795 (SAB1462c) comEA 1580250..1580936 (-) 687 WP_078062662.1 ComEA family DNA-binding protein Machinery gene
  SAB_RS07800 (SAB1463c) - 1580976..1581692 (-) 717 WP_000084837.1 class I SAM-dependent DNA methyltransferase -
  SAB_RS07805 (SAB1464c) rsfS 1581695..1582048 (-) 354 WP_001088020.1 ribosome silencing factor -
  SAB_RS07810 (SAB1465c) yqeK 1582049..1582633 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  SAB_RS07815 (SAB1466c) nadD 1582623..1583192 (-) 570 WP_000725166.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  SAB_RS07820 (SAB1467c) yhbY 1583195..1583485 (-) 291 WP_000955237.1 ribosome assembly RNA-binding protein YhbY -
  SAB_RS07825 (SAB1468c) aroE 1583489..1584295 (-) 807 WP_000666755.1 shikimate dehydrogenase -
  SAB_RS07830 (SAB1469c) yqeH 1584309..1585409 (-) 1101 WP_001280147.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25894.64 Da        Isoelectric Point: 9.4934

>NTDB_id=25155 SAB_RS07795 WP_078062662.1 1580250..1580936(-) (comEA) [Staphylococcus aureus RF122]
MVLLYQFLLRYKDFLTQWKLYIISTVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNYK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GDTNNTKINLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI

Nucleotide


Download         Length: 687 bp        

>NTDB_id=25155 SAB_RS07795 WP_078062662.1 1580250..1580936(-) (comEA) [Staphylococcus aureus RF122]
GTGGTTTTATTGTATCAATTTTTATTACGATATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTACTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTACAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGGACACAAATAATACTAAAATAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGATATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.93

100

0.969
  comEA Staphylococcus aureus N315

96.93

100

0.969

Multiple sequence alignment