Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SYNPCC7942_RS07005 Genome accession   NC_007604
Coordinates   1407202..1407837 (+) Length   211 a.a.
NCBI ID   WP_011378004.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 7942 = FACHB-805     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1402202..1412837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCC7942_RS06975 (Synpcc7942_1364) - 1402687..1403103 (+) 417 WP_011242505.1 HHL1-like protein -
  SYNPCC7942_RS14255 - 1403142..1403276 (+) 135 WP_265574994.1 hypothetical protein -
  SYNPCC7942_RS06985 (Synpcc7942_1365) - 1403362..1404060 (-) 699 WP_011378003.1 MarC family protein -
  SYNPCC7942_RS06990 (Synpcc7942_1366) menA 1404292..1405203 (-) 912 WP_011242503.1 2-carboxy-1,4-naphthoquinone phytyltransferase -
  SYNPCC7942_RS06995 (Synpcc7942_1367) - 1405262..1406629 (+) 1368 WP_011242502.1 cytochrome P450 -
  SYNPCC7942_RS07000 (Synpcc7942_1368) - 1406657..1406992 (+) 336 WP_011242501.1 SH3 domain-containing protein -
  SYNPCC7942_RS07005 (Synpcc7942_1369) recR 1407202..1407837 (+) 636 WP_011378004.1 recombination mediator RecR Machinery gene
  SYNPCC7942_RS07010 (Synpcc7942_1370) - 1407963..1408202 (+) 240 WP_011378005.1 hypothetical protein -
  SYNPCC7942_RS07015 (Synpcc7942_1371) corA 1408205..1409515 (-) 1311 WP_155813853.1 magnesium/cobalt transporter CorA -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23238.97 Da        Isoelectric Point: 7.6446

>NTDB_id=25144 SYNPCC7942_RS07005 WP_011378004.1 1407202..1407837(+) (recR) [Synechococcus elongatus PCC 7942 = FACHB-805]
MGLRSKNCVNAIVSVYTRPLARLIEHLQKLPGVGPKTAQRLALHLIQRPEAEIAAFAEALLAAKQQVGHCQRCFHLSSED
LCNICRDPKRDAQTICVVADPRDVIALEKTREYKGLYHVLGGLISPMDGIGPEQLTVQALVRRVAQEQTQEVIMAISPSV
EGETTTLYVGQLLKPFTRVTRIAFGLPMGGDLEYADEVTLARALEGRRDLT

Nucleotide


Download         Length: 636 bp        

>NTDB_id=25144 SYNPCC7942_RS07005 WP_011378004.1 1407202..1407837(+) (recR) [Synechococcus elongatus PCC 7942 = FACHB-805]
TTGGGTTTACGATCGAAAAATTGCGTCAATGCGATTGTGTCTGTTTATACCCGTCCGCTGGCCCGCCTGATTGAGCACCT
TCAGAAACTGCCAGGTGTTGGCCCCAAAACGGCTCAACGGTTAGCACTGCACCTCATTCAACGACCCGAAGCTGAAATCG
CAGCCTTTGCGGAAGCATTGCTAGCAGCCAAGCAACAAGTGGGGCACTGTCAGCGCTGTTTTCATCTCTCTTCGGAAGAC
CTCTGCAACATCTGCCGAGATCCCAAGCGCGACGCCCAAACCATCTGCGTGGTGGCTGATCCGCGCGACGTGATCGCCCT
TGAGAAAACCCGCGAATATAAGGGGCTCTATCACGTGCTGGGTGGGTTGATTTCGCCCATGGATGGCATCGGTCCTGAGC
AGCTAACGGTGCAGGCGCTGGTACGGCGAGTCGCTCAGGAGCAAACGCAGGAGGTGATTATGGCGATTAGCCCCAGCGTT
GAGGGCGAAACAACGACGCTCTATGTAGGGCAGCTTTTGAAACCCTTCACCCGTGTGACGCGCATTGCCTTTGGTTTACC
GATGGGGGGTGACTTGGAGTACGCCGATGAAGTGACGCTGGCTCGAGCGCTGGAGGGTCGCCGCGATCTGACTTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(53-91)

Toprim domain (Toprim_4)

(94-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

53.571

92.891

0.498
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.761

93.365

0.474
  recR Streptococcus pneumoniae R6

48.223

93.365

0.45

Multiple sequence alignment