Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SAB_RS05970 Genome accession   NC_007622
Coordinates   1201167..1202039 (+) Length   290 a.a.
NCBI ID   WP_000931874.1    Uniprot ID   -
Organism   Staphylococcus aureus RF122     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1196167..1207039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS05950 (SAB1107) ylqF 1197005..1197889 (+) 885 WP_000236717.1 ribosome biogenesis GTPase YlqF -
  SAB_RS05955 (SAB1108) - 1197873..1198640 (+) 768 WP_000176397.1 ribonuclease HII -
  SAB_RS05960 (SAB1109) sucC 1198749..1199915 (+) 1167 WP_001020798.1 ADP-forming succinate--CoA ligase subunit beta -
  SAB_RS05965 (SAB1110) sucD 1199937..1200845 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  SAB_RS05970 (SAB1111) dprA 1201167..1202039 (+) 873 WP_000931874.1 DNA-processing protein DprA Machinery gene
  SAB_RS05975 (SAB1112) topA 1202213..1204288 (+) 2076 WP_011382258.1 type I DNA topoisomerase -
  SAB_RS05980 (SAB1113) trmFO 1204444..1205751 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33238.47 Da        Isoelectric Point: 8.3148

>NTDB_id=25144 SAB_RS05970 WP_000931874.1 1201167..1202039(+) (dprA) [Staphylococcus aureus RF122]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKRNINHLSYSHTLAVVGSPLSGDYTLKALNHLFASFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=25144 SAB_RS05970 WP_000931874.1 1201167..1202039(+) (dprA) [Staphylococcus aureus RF122]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
AAGTTGTTGTGAAGTAGACGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAAGGAATAT
TAACCACCTTAGTTATTCGCACACTTTAGCTGTCGTTGGGTCACCATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGCTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

64.686

100

0.676
  dprA Staphylococcus aureus N315

65.862

100

0.659

Multiple sequence alignment