Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SAB_RS04770 Genome accession   NC_007622
Coordinates   969737..970306 (-) Length   189 a.a.
NCBI ID   WP_000283455.1    Uniprot ID   -
Organism   Staphylococcus aureus RF122     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 964737..975306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS04750 (SAB0889) - 966230..967588 (+) 1359 WP_000021871.1 TrkH family potassium uptake protein -
  SAB_RS04755 (SAB0890) - 967727..969238 (+) 1512 WP_000414188.1 bifunctional metallophosphatase/5'-nucleotidase -
  SAB_RS04770 (SAB0891c) comK/comK1 969737..970306 (-) 570 WP_000283455.1 competence protein ComK Regulator
  SAB_RS04775 (SAB0892) - 970516..970734 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  SAB_RS04780 (SAB0893c) - 970815..971801 (-) 987 WP_000668820.1 lipoate--protein ligase -
  SAB_RS04785 - 972000..972176 (+) 177 WP_000214898.1 YkvS family protein -
  SAB_RS04790 (SAB0894) - 972191..972793 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  SAB_RS04800 - 973710..973811 (+) 102 WP_042852647.1 hypothetical protein -
  SAB_RS14385 (SAB0895) - 973821..974093 (+) 273 WP_078062708.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22567.83 Da        Isoelectric Point: 9.5152

>NTDB_id=25143 SAB_RS04770 WP_000283455.1 969737..970306(-) (comK/comK1) [Staphylococcus aureus RF122]
MYPQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKSETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSCHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=25143 SAB_RS04770 WP_000283455.1 969737..970306(-) (comK/comK1) [Staphylococcus aureus RF122]
ATGTATCCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGCGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAATCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACTCATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATGCCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

98.413

100

0.984
  comK/comK1 Staphylococcus aureus N315

98.413

100

0.984

Multiple sequence alignment