Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   SYNPCC7942_RS06290 Genome accession   NC_007604
Coordinates   1248593..1249327 (-) Length   244 a.a.
NCBI ID   WP_011242637.1    Uniprot ID   Q31NW2
Organism   Synechococcus elongatus PCC 7942 = FACHB-805     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1243593..1254327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCC7942_RS06265 (Synpcc7942_1223) devC 1243830..1245008 (-) 1179 WP_011377924.1 ABC transporter permease DevC -
  SYNPCC7942_RS06270 (Synpcc7942_1224) - 1244992..1246092 (-) 1101 WP_011242640.1 HlyD family efflux transporter periplasmic adaptor subunit -
  SYNPCC7942_RS06275 (Synpcc7942_1225) - 1246181..1246927 (-) 747 WP_011377925.1 phycocyanobilin:ferredoxin oxidoreductase -
  SYNPCC7942_RS06280 (Synpcc7942_1226) - 1247104..1248369 (+) 1266 WP_011377926.1 M16 family metallopeptidase -
  SYNPCC7942_RS06290 (Synpcc7942_1227) ysxA/radC 1248593..1249327 (-) 735 WP_011242637.1 RadC family protein Machinery gene
  SYNPCC7942_RS06295 (Synpcc7942_1228) - 1249355..1250224 (+) 870 WP_011377927.1 EamA family transporter -
  SYNPCC7942_RS06300 (Synpcc7942_1229) cobM 1250193..1250987 (-) 795 WP_011377928.1 precorrin-4 C(11)-methyltransferase -
  SYNPCC7942_RS06305 (Synpcc7942_1230) lgt 1250977..1251846 (-) 870 WP_011377929.1 prolipoprotein diacylglyceryl transferase -
  SYNPCC7942_RS06310 (Synpcc7942_1231) petA 1251930..1252904 (-) 975 WP_011242633.1 cytochrome f -
  SYNPCC7942_RS06315 (Synpcc7942_1232) - 1252950..1253489 (-) 540 WP_011242632.1 cytochrome b6-f complex iron-sulfur subunit -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26275.22 Da        Isoelectric Point: 6.3868

>NTDB_id=25143 SYNPCC7942_RS06290 WP_011242637.1 1248593..1249327(-) (ysxA/radC) [Synechococcus elongatus PCC 7942 = FACHB-805]
MATSGLRVADLPEDERPRERLMRSGASSLSTAELLAILLGTGQGPGGLSAVGLGQLLLSQLGEHQREPLRVLRQITVTEL
MQIPGIGPAKATAIAAAIELGKRIYQTTTSELLPITSPEAAAKALSADLMWAEQERFALLLLDVRHNLLAQRVLTIGTAT
ETLANPREIFREALRLGATRLIVAHNHPSGQVDPSSADLSLTEQLLQLGQALELPVLDHLILGQGHHRSLRDTTGLWQKF
PQGD

Nucleotide


Download         Length: 735 bp        

>NTDB_id=25143 SYNPCC7942_RS06290 WP_011242637.1 1248593..1249327(-) (ysxA/radC) [Synechococcus elongatus PCC 7942 = FACHB-805]
ATGGCGACTTCTGGTTTGCGCGTGGCTGATCTGCCCGAAGATGAGCGACCGCGGGAACGGCTGATGCGATCGGGAGCTAG
CAGCCTCTCGACGGCTGAACTGCTCGCGATCTTGTTAGGAACGGGACAAGGACCGGGTGGATTGTCCGCCGTTGGGCTGG
GTCAACTGCTCCTCAGTCAGCTAGGAGAACACCAACGCGAACCGTTGCGCGTTCTGCGTCAAATTACGGTTACTGAACTG
ATGCAAATTCCTGGAATTGGTCCAGCTAAGGCGACAGCGATCGCTGCTGCGATCGAGTTAGGTAAGCGCATCTATCAAAC
GACGACGAGTGAGTTGCTACCGATCACGTCGCCGGAAGCGGCTGCCAAGGCTCTCAGCGCCGATCTGATGTGGGCGGAGC
AGGAACGCTTTGCCCTGCTGCTGTTGGATGTTCGCCATAACCTCTTGGCCCAACGGGTGCTGACCATCGGGACCGCCACT
GAAACCTTGGCCAATCCCCGCGAAATTTTCCGAGAAGCCCTACGCCTCGGGGCAACTCGCTTGATCGTGGCCCATAACCA
TCCGTCTGGGCAGGTCGATCCCAGCAGTGCCGACCTGAGTTTGACGGAACAACTACTGCAACTCGGGCAAGCGCTGGAGC
TACCCGTGCTCGATCACCTCATTTTGGGCCAAGGACACCATCGCAGCTTGCGCGACACCACAGGGCTTTGGCAGAAATTT
CCACAGGGCGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(115-232)

UPF0758 N-terminal (UPF0758_N)

(9-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31NW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.767

93.033

0.361

Multiple sequence alignment